PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02253g07014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 174aa    MW: 19987.8 Da    PI: 10.0444
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02253g07014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.3e-171461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+WT+eEd +++ +v+ +  g+W++++++ g++R++k+c++rw +yl
  Niben101Scf02253g07014.1 14 RGPWTAEEDAKILAYVATHAIGNWTLVPQKAGLNRCGKSCRLRWTNYL 61
                              89********************************************97 PP
2Myb_DNA-binding51.52.3e-1668110246
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +++T++E+e +++++k  G++ W++Ia+ ++ gRt++++k++w++
  Niben101Scf02253g07014.1  68 DNFTPQEEECILELHKTIGSR-WSLIAKQLP-GRTDNDVKNYWNT 110
                               68*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.067961IPR017930Myb domain
SuperFamilySSF466894.79E-3111108IPR009057Homeodomain-like
SMARTSM007173.1E-131363IPR001005SANT/Myb domain
PfamPF002496.6E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-241568IPR009057Homeodomain-like
CDDcd001674.57E-101661No hitNo description
PROSITE profilePS5129423.99562116IPR017930Myb domain
SMARTSM007179.5E-1566114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-2669117IPR009057Homeodomain-like
PfamPF002495.4E-1569110IPR001005SANT/Myb domain
CDDcd001674.63E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MGRPTFCDKA NVKRGPWTAE EDAKILAYVA THAIGNWTLV PQKAGLNRCG KSCRLRWTNY  60
LRPDLKHDNF TPQEEECILE LHKTIGSRWS LIAKQLPGRT DNDVKNYWNT RLKKKLVNMG  120
IDPVTHKPFA QVFAEYGKIS GLSIQNSRNN TTEISKQNFH SQVELHMTNL FTTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606135.11e-108PREDICTED: transcription factor MYB35
RefseqXP_019235641.11e-108PREDICTED: transcription factor MYB35-like
SwissprotQ9LSI73e-74MYB35_ARATH; Transcription factor MYB35
TrEMBLA0A1J6K5N31e-107A0A1J6K5N3_NICAT; Transcription factor myb35
STRINGXP_009606135.11e-107(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.11e-76MYB family protein
Publications ? help Back to Top
  1. Tsugama D, et al.
    A putative MYB35 ortholog is a candidate for the sex-determining genes in Asparagus officinalis.
    Sci Rep, 2017. 7: p. 41497
    [PMID:28176806]
  2. Lou Y, et al.
    Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana.
    New Phytol., 2018. 217(1): p. 378-391
    [PMID:28940573]
  3. Li DD,Xue JS,Zhu J,Yang ZN
    Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 1559
    [PMID:28955355]