PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02227g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 337aa    MW: 39013.5 Da    PI: 8.7705
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02227g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.8e-0689112226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               k  lC ff + G+C  G +CkF+H+
  Niben101Scf02227g01002.1  89 KSILCEFFKA-GQCAKGFKCKFSHD 112
                               6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.45E-687112IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-487113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15987114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-489113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.793160198IPR000571Zinc finger, CCCH-type
SMARTSM003564.7160197IPR000571Zinc finger, CCCH-type
PfamPF165432.2E-16218297IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MPPKQSKADL VKKQKVVEDK TFGLKNKNKS KNVQKYVQSL KQNVVPKPDP KKLDAKKKKE  60
EERAKEKELN ELFKVAISQP KVPLGVDPKS ILCEFFKAGQ CAKGFKCKFS HDLNVQRKGE  120
KIDVFSDNRD EDGKETMEDW DQETLEKVVA SKSQEYNKNK PTDIVCKYFL EAVEKKQYGW  180
FWVCPNGGKE CHYRHALPPG YILKSQMKAL LQEEADKMPI EEEIDEQRAK LTASTPLTTE  240
LFMEWKKKKM EEREASLAKQ RADRAKNDRM SGRELFMSDA SWFVDDVGAY DKYERDEESG  300
ESSKENKESA RDEASSSIII IACKWNEMKW KHSISMS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788679.10.0PREDICTED: zinc finger CCCH domain-containing protein 11-like isoform X2
RefseqXP_016463307.10.0PREDICTED: zinc finger CCCH domain-containing protein 11-like isoform X2
SwissprotQ0JHZ21e-169C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A1S3ZGA10.0A0A1S3ZGA1_TOBAC; zinc finger CCCH domain-containing protein 11-like isoform X2
TrEMBLA0A1U7XP030.0A0A1U7XP03_NICSY; zinc finger CCCH domain-containing protein 11-like isoform X2
STRINGXP_009788678.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA568078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-145C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]