PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02188g02020.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 637aa MW: 69943.3 Da PI: 4.9455

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02188g02020.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	313.9	3.4e-96	347	627	1	289
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalk 82 lv+lLl+cAeavs++d la+++L l+ ++p gd+mqR+a++ft AL arla + +++++a +p + + ns e l++++ Niben101Scf02188g02020.1 347 LVHLLLACAEAVSKEDYMLARRYLHYLNRVVTPIGDSMQRVASCFTDALTARLAAtlaTKPSTSSASKPFNPFPPNSLEILKIYQ 431 68*************************************************98433445666666666666677***** PP GRAS 83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167 ++++++P++kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+ s e+++etg+ L++ Niben101Scf02188g02020.1 432 ILYQACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SPEAVRETGRCLTE 512 ***************************************************************....9********* PP GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252 +A++l+vpfef++ v ++ledl++++++ + gEalaVn+v qlhr++ +++ ++L ++++ P++v++ve+ea+hn++ Niben101Scf02188g02020.1 513 LAHSLHVPFEFHP-VGEQLEDLKPHMFNRRIGEALAVNSVNQLHRVP------VNCIGNLLAMIRDQAPNIVTIVEEEASHNGPY 590 *********.7***************************9......444557********************** PP GRAS 253 FlerflealeyysalfdsleaklpreseerikvErel 289 Fl rfleal+yysa+fdsl+a++p++s++r+k+E+ + Niben101Scf02188g02020.1 591 FLGRFLEALHYYSAIFDSLDATFPADSSQRAKLEQYI 627 ********************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	53.778	321	637	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-93	347	627	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence Send to blast
MSVMNNSLSV SMGSLKNDIK SEVGSLKSEI GSFKSENSYS KLLLDESSLT SSESKKVTPV 60 TSDFELNCGS LAPTSLSFPA LKFEVDDDVE IQSPDNSIWE SFFADQLEGD FMISSPVRNL 120 PSPQPASYFS TTTHSNNNNN NNYNVYAHHH GIHGQSMMMC SPPRSPLGPN YHSSNKGKGL 180 SPLQKVFNSP NNQFMQIESF NLPALESFLD DDYDKEEGFA SSYSALKVSG SGVAGSSSES 240 FDALSVVPDL LECLALPNSS SNAPGSFMGS LLGDASAVPD DEIFQTGSIA PLSQQLQHER 300 QHEKQQKQRP ITHAQPPTTQ QIQHTQIINH NLVVAAPDQE QDSGLQLVHL LLACAEAVSK 360 EDYMLARRYL HYLNRVVTPI GDSMQRVASC FTDALTARLA ATLATKPSTS SASKPFNPFP 420 PNSLEILKIY QILYQACPYV KFAHFTANQA IFEAFEAEER VHVIDLDILQ GYQWPAFMQA 480 LAARPGGAPF LRITGVGPSP EAVRETGRCL TELAHSLHVP FEFHPVGEQL EDLKPHMFNR 540 RIGEALAVNS VNQLHRVPVN CIGNLLAMIR DQAPNIVTIV EEEASHNGPY FLGRFLEALH 600 YYSAIFDSLD ATFPADSSQR AKLEQYICAG DNEYSVV

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence Send to blast

MSVMNNSLSV SMGSLKNDIK SEVGSLKSEI GSFKSENSYS KLLLDESSLT SSESKKVTPV  60
TSDFELNCGS LAPTSLSFPA LKFEVDDDVE IQSPDNSIWE SFFADQLEGD FMISSPVRNL  120
PSPQPASYFS TTTHSNNNNN NNYNVYAHHH GIHGQSMMMC SPPRSPLGPN YHSSNKGKGL  180
SPLQKVFNSP NNQFMQIESF NLPALESFLD DDYDKEEGFA SSYSALKVSG SGVAGSSSES  240
FDALSVVPDL LECLALPNSS SNAPGSFMGS LLGDASAVPD DEIFQTGSIA PLSQQLQHER  300
QHEKQQKQRP ITHAQPPTTQ QIQHTQIINH NLVVAAPDQE QDSGLQLVHL LLACAEAVSK  360
EDYMLARRYL HYLNRVVTPI GDSMQRVASC FTDALTARLA ATLATKPSTS SASKPFNPFP  420
PNSLEILKIY QILYQACPYV KFAHFTANQA IFEAFEAEER VHVIDLDILQ GYQWPAFMQA  480
LAARPGGAPF LRITGVGPSP EAVRETGRCL TELAHSLHVP FEFHPVGEQL EDLKPHMFNR  540
RIGEALAVNS VNQLHRVPVN CIGNLLAMIR DQAPNIVTIV EEEASHNGPY FLGRFLEALH  600
YYSAIFDSLD ATFPADSSQR AKLEQYICAG DNEYSVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-66	354	629	26	297	Protein SCARECROW
5b3h_A	4e-66	354	629	25	296	Protein SCARECROW
5b3h_D	4e-66	354	629	25	296	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803754.1	0.0	PREDICTED: DELLA protein RGL2-like
Refseq	XP_016497576.1	0.0	PREDICTED: DELLA protein RGL2-like
Swissprot	G7L166	0.0	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A1J6IQL6	0.0	A0A1J6IQL6_NICAT; Della protein gai1
STRING	XP_009803754.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12566	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	2e-65	RGA-like 2

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]