PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02156g08004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 355aa    MW: 39931.1 Da    PI: 9.1747
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02156g08004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.72.4e-1623106273
                  trihelix   2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                               Wt +e+++Liea++ ++er  +++              + +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ ++
  Niben101Scf02156g08004.1  23 WTVEETMVLIEAKKMDDERRMKRQgegtstefrgnkPGELRWKWVEDYCWKMGCLRSQNQCNDKWDNLMRDFKKVREYERRVAE 106
                               *************966666554333344555555448899***************************************98744 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1661591IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.4E-41792IPR009057Homeodomain-like
PfamPF138375.8E-1322102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDRVVSNQSG GSNMLRDYRK GNWTVEETMV LIEAKKMDDE RRMKRQGEGT STEFRGNKPG  60
ELRWKWVEDY CWKMGCLRSQ NQCNDKWDNL MRDFKKVREY ERRVAEKGDN QGIIMKSYWK  120
IERSERKEKN LPTNMLPEIY EALAQVVDRK CTQKLLLGGG GTSAAAAVSL NPSTSLTNSL  180
SPTLQQQSFQ AQIAALPLPP PPPTLSPPAV VAQQSAQPPS LPYAQPLPAM CDSSDHDRSE  240
HSDSPAKRRR KGEGEGTSSG NNNNINNFQE VGSAIFKSAA IIAETIQASE EREERRHRQI  300
LSLHERRLQI EESKAEINRQ GINGLVDSIN RLANSILSLA VLRYTVSIIM GNTKC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009614093.10.0PREDICTED: trihelix transcription factor ASR3-like isoform X1
RefseqXP_016501444.10.0PREDICTED: trihelix transcription factor ASR3-like
TrEMBLA0A1S4CKL30.0A0A1S4CKL3_TOBAC; trihelix transcription factor ASR3-like
STRINGXP_009614093.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48212236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-59Trihelix family protein