PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02111g17003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 517aa    MW: 59546.7 Da    PI: 4.8193
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02111g17003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS277.93e-851505081360
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalkl 83 
                               l+e Ll+cAe v +++  +a++lL++  +l+s++g+p+qRl+ yf +AL++r+ +  +++  k l+    ++ + + ++++  ++
  Niben101Scf02111g17003.1 150 LIECLLSCAEKVGQKQYDRATKLLNECDKLSSKTGNPVQRLVYYFSRALRERIDQeIGENSTKGLEIYGMRDVQeELRSINQCTI 234
                               5789*************************************************99788888899988888865535566666666 PP

                      GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egpp..slRiTgvgspesgskeeleetger 164
                                ++  P+ ++  ++  qaI e v ++e++HiiD++i++G+QW  L+qaL + +  +++p   l+iT++g+ +  s+++leetg+r
  Niben101Scf02111g17003.1 235 AVQDMPLCQVIKFAGIQAIAENVRNSEKIHIIDLEIKMGVQWTILIQALVAHQqeSQSPfeYLKITAIGNTQ--SRTKLEETGKR 317
                               9999*********************************************9777564455458********55..*********** PP

                      GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                               L +fA++l++ f f+ ++ +++ dl+ e+L+++p+E++aV  ++ l+++  ++   e+  d ++ ++k+++P+++v++e ea+hn
  Niben101Scf02111g17003.1 318 LMSFAKSLNLLFYFKSVIIEDIFDLKKEDLDIDPEETIAVYAQHFLMNMIMKQ---EK-LDFLMGFIKGINPRIMVIAEVEANHN 398
                               *************************************************9444...44.6669********************** PP

                      GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                               s+ F++rf+eal y+ a+fd +e  + +++++r+ +E e++ + i+n+va+eg+er+ rh t + W+e ++++G+++++ls++  
  Niben101Scf02111g17003.1 399 SPVFVDRFIEALFYHGAFFDLFEDCMKNNESNRTAMESEFMWQGIRNIVAAEGEERTIRHVTIKLWSEYFKRFGMEEMRLSNSSL 483
                               ************************************************************************************* PP

                      GRAS 335 kqaklllrkvk.sdgyrveeesgslvl 360
                                qak++l+k++  + +++e + +  +l
  Niben101Scf02111g17003.1 484 YQAKMILEKFStANSFTLEMNGN--FL 508
                               ***********888888876544..44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.68124503IPR005202Transcription factor GRAS
PfamPF035141.0E-82150508IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MEAAQEISWF STGIVLNQED EEDITSKKQL PSDSDFVTFD DWDFDVENET KTALYVTPES  60
LTHNKKSRTS SISSLNILKA FGNGFRKLKG QKVTIQTSEI ERANNGKLST DSVLRLGGHN  120
FIQSFESSVD HPFVSSLLSL SDEDYRSVEL IECLLSCAEK VGQKQYDRAT KLLNECDKLS  180
SKTGNPVQRL VYYFSRALRE RIDQEIGENS TKGLEIYGMR DVQEELRSIN QCTIAVQDMP  240
LCQVIKFAGI QAIAENVRNS EKIHIIDLEI KMGVQWTILI QALVAHQQES QSPFEYLKIT  300
AIGNTQSRTK LEETGKRLMS FAKSLNLLFY FKSVIIEDIF DLKKEDLDID PEETIAVYAQ  360
HFLMNMIMKQ EKLDFLMGFI KGINPRIMVI AEVEANHNSP VFVDRFIEAL FYHGAFFDLF  420
EDCMKNNESN RTAMESEFMW QGIRNIVAAE GEERTIRHVT IKLWSEYFKR FGMEEMRLSN  480
SSLYQAKMIL EKFSTANSFT LEMNGNFLRW FSDRDME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3415751026367Protein SCARECROW
5b3h_A1e-3415751025366Protein SCARECROW
5b3h_D1e-3415751025366Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019237374.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1S3YF030.0A0A1S3YF03_TOBAC; scarecrow-like protein 18
TrEMBLA0A1U7WX610.0A0A1U7WX61_NICSY; scarecrow-like protein 18
STRINGXP_009779274.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.18e-53RGA-like 1