PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02090g06012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 661aa    MW: 74503 Da    PI: 4.7093
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02090g06012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.45e-52291552128
                       NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                               ppGfrFhPtdeelvv+yLk+k+ ++++ l ++i+e+d+yk++P+dLp  +k+k+++++w+fFs+rd+ky++g r+nratk+gyWk
  Niben101Scf02090g06012.1  29 PPGFRFHPTDEELVVYYLKRKICRRRILL-DAIAETDVYKWDPEDLPdlSKLKTGDRQWFFFSPRDRKYPNGARSNRATKHGYWK 112
                               9*************************999.99**************96559999******************************* PP

                       NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               atgkd+ +++ ++++vg+kktLvfykgrap ge+tdWvmhey++
  Niben101Scf02090g06012.1 113 ATGKDRIITC-NSRAVGVKKTLVFYKGRAPVGERTDWVMHEYTM 155
                               **********.999****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-6022178IPR003441NAC domain
PROSITE profilePS5100556.07428178IPR003441NAC domain
PfamPF023651.0E-2729154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MKLLVDSSTP SSSSACKEIK VFGENNVFPP GFRFHPTDEE LVVYYLKRKI CRRRILLDAI  60
AETDVYKWDP EDLPDLSKLK TGDRQWFFFS PRDRKYPNGA RSNRATKHGY WKATGKDRII  120
TCNSRAVGVK KTLVFYKGRA PVGERTDWVM HEYTMDEEEL KRCENAQDYY ALYKVFKKSG  180
PGPKNGEQYG APFREEDWVD DECPVAEVSV QQENSIKHVN EVPAAAADAL EELMKRIADD  240
EPVLLEPFFV DNDYALDQLV QEEDTESTLL DLSSMEVNLY NHCAVVGPSC QQYNANTSFD  300
LTQSGTSQLQ LHEAAEVSSA PVNPEKALPA VEEDFLEDFL EMDDLLGPEL SAQNFDDSAL  360
SIQNCDYQTP NVQIFDKPAE NLETVQFDDF DGLGEFDLYH DAHLLDNEGT TVGQNTELYM  420
NNFVNGIAYP DSTTYMSTFQ NDMMNNRQMH LNHENQINHQ LWRHDESFNV FNPIEGDQSV  480
VHQATSGVVY DNNTNHPVGA NQNPIAKKDD GAQSWISSNL WAFVDSIPTT PASAAESALV  540
NRAFERMSSF SRMKLNGRNM NVAAGNTSAA SSSSGKSKNG FFCFSLLGVL CAVLWGQPMR  600
DGHNKVYKPF SDVIEGRRKD FRLGKPAFQR NQQAREATVV AYLVEAAKYM HPLVKPAKAI  660
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-492818420174NAC domain-containing protein 19
3swm_B3e-492818420174NAC domain-containing protein 19
3swm_C3e-492818420174NAC domain-containing protein 19
3swm_D3e-492818420174NAC domain-containing protein 19
3swp_A3e-492818420174NAC domain-containing protein 19
3swp_B3e-492818420174NAC domain-containing protein 19
3swp_C3e-492818420174NAC domain-containing protein 19
3swp_D3e-492818420174NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1615622GRRKDFRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016438196.10.0PREDICTED: NAC domain-containing protein 17-like isoform X1
TrEMBLU5PZ850.0U5PZ85_NICBE; Putative membrane bound NAC transcription factor 2
STRINGXP_009786294.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32122451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-115NAC domain containing protein 17