PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02085g15011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 261aa MW: 31342.5 Da PI: 5.431 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82.5 | 5.7e-26 | 35 | 117 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W+ qe+++ + +r em++++ ++k++k lWe +++km+e+g++rs++qCk+kw+nl +ryk ++++e + ++++p++++l Niben101Scf02085g15011.1 35 QWSIQETKEFLMIRGEMDQNFMETKRNKLLWEVIAAKMKEKGYNRSAEQCKCKWKNLVTRYKGCETMEAEA--L-RQQFPFYNEL 116 7********************************************************************95..3.4589*****9 PP trihelix 86 e 86 + Niben101Scf02085g15011.1 117 Q 117 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0085 | 32 | 94 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 4.11E-24 | 34 | 99 | No hit | No description |
Pfam | PF13837 | 6.9E-22 | 35 | 119 | No hit | No description |
PROSITE profile | PS50090 | 7.364 | 36 | 92 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEGQPNLYHQ HQFVSQQSLL NIDTSGVGGG DRFPQWSIQE TKEFLMIRGE MDQNFMETKR 60 NKLLWEVIAA KMKEKGYNRS AEQCKCKWKN LVTRYKGCET MEAEALRQQF PFYNELQAIF 120 MERMLRMEAE EEENDVDSEE EKGSNKKKRK LKGNTSSSST NVASGTLEGN LKEILDEFMN 180 KQMEMEMQWQ KEYERREEER KIKEMEWRQK MEAVQNERLM MEKRWREREE QWKMREEGRA 240 EKRDALITAL LNKLRSEDTS N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 150 | KKKRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016464713.1 | 1e-153 | PREDICTED: trihelix transcription factor GT-3b-like | ||||
Swissprot | O80450 | 7e-64 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | A0A1S3ZKD6 | 1e-151 | A0A1S3ZKD6_TOBAC; trihelix transcription factor GT-3b-like | ||||
STRING | XP_009768581.1 | 1e-152 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4187 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 9e-51 | Trihelix family protein |
Publications ? help Back to Top | |||
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