PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01977g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 343aa    MW: 38777.6 Da    PI: 7.1655
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01977g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.64.5e-27131191259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                               dDgy+WrKYGqK++ gs +pr+YYrCt++   gC ++k+v+rs  + +++e+tY+g+H ++
  Niben101Scf01977g00001.1 131 DDGYSWRKYGQKDILGSIHPRAYYRCTHRntqGCLATKQVQRSVGNSSTFEVTYKGRHSCR 191
                               8***************************98889*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-27118191IPR003657WRKY domain
PROSITE profilePS5081122.917125193IPR003657WRKY domain
SuperFamilySSF1182905.23E-25129191IPR003657WRKY domain
SMARTSM007741.1E-37130192IPR003657WRKY domain
PfamPF031061.1E-24131191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEKVKGFEKK KLITELTQGR EFVNQLKKQI GPFASPEECD LLLGKILFSL EKSLSILNLK  60
ALLLEGGNAN STSSCSSISF LGNNNSPNSE VLDSSKDQLV GQNVFTKKRK TPYQWSKQVS  120
ISGTGLEGPH DDGYSWRKYG QKDILGSIHP RAYYRCTHRN TQGCLATKQV QRSVGNSSTF  180
EVTYKGRHSC RIAKSEIFSL ETQKRQKHNK KQELVYQRQE QEMVIFNSGP NHKVENFNLT  240
KQEVFTTPFS FPPTPLNPIE ETQYFSNSMP PFSSPVTSEL PTYMSLLTDH NQEFAMENIL  300
QSSDVTELIS TPTSISNSPF GGDWDFSVDF EPSATFDIEE FFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-19131191969OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798860.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1U7YJ600.0A0A1U7YJ60_NICSY; probable WRKY transcription factor 41
STRINGXP_009798860.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.26e-38WRKY family protein