PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01954g02004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 441aa    MW: 48576.6 Da    PI: 5.4531
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01954g02004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13269315455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI++L+
  Niben101Scf01954g02004.1 269 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYINQLK 315
                               799***********************6.....4*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.4E-5327204IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.856265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.43E-15268318No hitNo description
SuperFamilySSF474591.44E-17268327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-16269324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10269314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-17271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEQFMGSSSP MVDSSIPQGD NQLPLGLQHM LQYVIKSQPD WWAYAIFWQT STDDEGKAFL  60
AWGDGYFQGA KGGAAVSSSS SSEAAQSERQ KVIRGIQALI DGDNNLLEDG DVTDTEWFYV  120
MSLASSFSVD NESVPGKAFS SGNFVWITGA AQFPLYSCER AKEAQIHGIQ TLLCIPTSNG  180
VLELGSAHLI KENFDLVQQV KSLFLSCPPI QFLEKSICFA DIGLVTGLQQ DNEEKLENQQ  240
LDSDKKAVAK KRGRKPKGGD SNINMVALNH VEAERQRREK LNHRFYALRS VVPNVSRMDK  300
ASLLSDAVSY INQLKAKVDE LELQLIDHSS SSNKKQKSNE SGENQSTNTS VDQELRPNSS  360
LEVEVKIVGP DAMIRVQSEN VNHPSAKLMS ALRHLQLQVH HASISSVNNL MLHDVVVKAP  420
LGLRTEDGLR TALLTTLESN T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-38272049192Transcription factor MYC3
4rqw_B9e-38272049192Transcription factor MYC3
4rs9_A9e-38272049192Transcription factor MYC3
4yz6_A9e-38272049192Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435398.10.0PREDICTED: transcription factor MYC2-like isoform X1
RefseqXP_018632639.10.0PREDICTED: transcription factor MYC2-like isoform X1
RefseqXP_018632642.10.0PREDICTED: transcription factor MYC2-like isoform X1
RefseqXP_018632644.10.0PREDICTED: transcription factor MYC2-like isoform X1
RefseqXP_019226091.10.0PREDICTED: transcription factor MYC4
TrEMBLA0A1S3X6Q70.0A0A1S3X6Q7_TOBAC; transcription factor MYC2-like isoform X1
TrEMBLA0A314KU410.0A0A314KU41_NICAT; Transcription factor bhlh14
STRINGXP_009623534.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.15e-85bHLH family protein