PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01927g08004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 379aa MW: 43277.3 Da PI: 7.0661

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01927g08004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3e-06	151	171	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C +Gd C FaHg Niben101Scf01927g08004.1 151 ACPDFRK-GNCLRGDGCEFAHG 171 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.9E-4	146	172	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.878	147	173	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.3E-5	151	173	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	12	181	204	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.559	181	205	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MIGGKNHHFN PTVDVPPWPY TDDQTAIMHF MLCPNENSNS TFNFAEDYSQ FELENGEIEL 60 PVDMYACDNF RMFEFKVRNC ARGRSHDWTE CPYLHPGEKA RRRDPRELFE XFKVRNCARG 120 RSHDWTECPY LHPGEKARRR DPRKYHYSGT ACPDFRKGNC LRGDGCEFAH GVFECWLHPA 180 RYRTQPCKDG VNCKRRVCFF AHSADQLRLL SPNADSAFEH QSPRLCGRAL QFVSSPESSS 240 PPTESPPMSP MLSRSLGSYS VNDAIASLRR LQLNRLNSMP SAWNVQLGSP RLGSPGRSVS 300 RPGFCSLPVT PTGNLTRPGN RCFDLWEEEP VFERVESGRD LRVKMFEEFS KEDPLDGVNP 360 NLNSDALNPD VGWVSDLIQ

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MIGGKNHHFN PTVDVPPWPY TDDQTAIMHF MLCPNENSNS TFNFAEDYSQ FELENGEIEL  60
PVDMYACDNF RMFEFKVRNC ARGRSHDWTE CPYLHPGEKA RRRDPRELFE XFKVRNCARG  120
RSHDWTECPY LHPGEKARRR DPRKYHYSGT ACPDFRKGNC LRGDGCEFAH GVFECWLHPA  180
RYRTQPCKDG VNCKRRVCFF AHSADQLRLL SPNADSAFEH QSPRLCGRAL QFVSSPESSS  240
PPTESPPMSP MLSRSLGSYS VNDAIASLRR LQLNRLNSMP SAWNVQLGSP RLGSPGRSVS  300
RPGFCSLPVT PTGNLTRPGN RCFDLWEEEP VFERVESGRD LRVKMFEEFS KEDPLDGVNP  360
NLNSDALNPD VGWVSDLIQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019246881.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 20-like
Swissprot	Q9M0G2	1e-106	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A1J6IB25	0.0	A0A1J6IB25_NICAT; Zinc finger ccch domain-containing protein 20
STRING	XP_009802285.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1857	21	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	2e-95	C3H family protein

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]