PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01784g03001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 386aa MW: 40355.1 Da PI: 9.9206

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01784g03001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.3	2.9e-07	358	378	5	25
CHHHCHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKk 25 +r+rr++kNRe+A rsR+RK+ Niben101Scf01784g03001.1 358 RRQRRMIKNRESAARSRARKQ 378 79******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.6E-5	353	378	No hit	No description
CDD	cd14707	2.56E-13	358	383	No hit	No description
PROSITE pattern	PS00036	0	361	376	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MGSNLNIKNR GNEPPGESGS GGAGVPLVRQ SSVYSLTFDE FLRGSGKDFG SMNMDELLKN 60 IWSAEESQNM GTSGVGGQEV GVPGGNLQRQ GSLTLPRTLS QKTVDEVWKD MSKEYCGGKD 120 GNGDLGLSNM PRRQQTLGEM TLEDFLVRAG VVREDAQLDA KASNVGVFGD MSHAGTSLGV 180 GFGYQQSNGN TAMVASRNID NNSGIGVRSG NLPLNVNGII SVQQQQGTMQ LQQQPQQQQQ 240 QQQQPLFPKQ LGLAYGAPMA IPTSGQLGSP GIRGGIVGIS DPALGSSLVQ SAALTGGGMN 300 MVGFGAGGVT SATGSPAVSS DGLGKSNGDT SSISPVPYVF SGGLRGRKGG AVEKVVERRQ 360 RRMIKNRESA ARSRARKQVI SLESYR

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MGSNLNIKNR GNEPPGESGS GGAGVPLVRQ SSVYSLTFDE FLRGSGKDFG SMNMDELLKN  60
IWSAEESQNM GTSGVGGQEV GVPGGNLQRQ GSLTLPRTLS QKTVDEVWKD MSKEYCGGKD  120
GNGDLGLSNM PRRQQTLGEM TLEDFLVRAG VVREDAQLDA KASNVGVFGD MSHAGTSLGV  180
GFGYQQSNGN TAMVASRNID NNSGIGVRSG NLPLNVNGII SVQQQQGTMQ LQQQPQQQQQ  240
QQQQPLFPKQ LGLAYGAPMA IPTSGQLGSP GIRGGIVGIS DPALGSSLVQ SAALTGGGMN  300
MVGFGAGGVT SATGSPAVSS DGLGKSNGDT SSISPVPYVF SGGLRGRKGG AVEKVVERRQ  360
RRMIKNRESA ARSRARKQVI SLESYR

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016484293.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	2e-93	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A1S4B670	0.0	A0A1S4B670_TOBAC; ABSCISIC ACID-INSENSITIVE 5-like protein 5
STRING	XP_009795221.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA776	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	6e-85	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]