PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01750g08006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TALE | ||||||||
Protein Properties | Length: 633aa MW: 70396.5 Da PI: 7.662 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.8 | 4.4e-09 | 379 | 416 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ L+k++gLt +qV++WF N R + Niben101Scf01750g08006.1 379 FEHflHPYPKDSDKIMLSKQTGLTRSQVSNWFINARVR 416 554459******************************88 PP | |||||||
2 | BELL | 114.3 | 6.5e-37 | 245 | 316 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqe q+kkakL+++leeV++rY+qy++q+q+++s Fe+vag+gsak+Yt+lAl+aiS++FrcLkd i++qi Niben101Scf01750g08006.1 245 QRQEFQMKKAKLVTMLEEVEQRYRQYHQQMQIIVSTFEQVAGIGSAKSYTQLALHAISKQFRCLKDTIVGQI 316 699*******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.9E-56 | 168 | 314 | IPR006563 | POX domain |
Pfam | PF07526 | 4.6E-47 | 173 | 312 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.693 | 357 | 420 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-9 | 360 | 424 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.55E-11 | 360 | 421 | No hit | No description |
SuperFamily | SSF46689 | 1.45E-16 | 361 | 426 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-28 | 363 | 426 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.7E-18 | 377 | 416 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 633 aa Download sequence Send to blast |
MYYQGTSDNI HQAADGNIQT LYLMNPSYIH QGYTDTQHHH HQQQIIPHAL MQHFVGVPLP 60 AVSLHDQNHA QLIHRLWNQS GSGGGNGIHH QSQIIPSSTV VSATSCGGTT TDLASQLGFQ 120 RPITMSPTQQ QQRQSGLSLS LSPQQQQLSF NNISGQNQVG SNINRGLDGI SSMVLGSKYL 180 KAAQELLDEV VSVGKCTKGG EVEKEELINN ESILPWASHD VNTNNGGSES SSKQKYGVAE 240 LTTSQRQEFQ MKKAKLVTML EEVEQRYRQY HQQMQIIVST FEQVAGIGSA KSYTQLALHA 300 ISKQFRCLKD TIVGQIKATS KSLGEEDEGV GGKTRLKFVD HHLRQQRALQ QLGMMQPNAW 360 RPQRGLPERA VSVLRAWLFE HFLHPYPKDS DKIMLSKQTG LTRSQVSNWF INARVRLWKP 420 MVEEMYLEEV KNNQEQNSSS EGNKNKNESN KEKMVSKSSG PQENGTPAEI ATSTSSTSPP 480 ACGSFQAVQA HNFSFLGSLN MENNTTAKKP RNHDMHNNSP SSILSSVEMM AETKARDHQS 540 NKGFNPLMDA AAVYTMGEFG RFNPHEQMAA TNFHGNNGVS LTLGLPPNSE NQSQQSYQNT 600 IEFNRMSYED IDFQNKRFPS QLLPDFVAGN LGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-15 | 366 | 424 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-15 | 366 | 424 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019264721.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 7 | ||||
Swissprot | O65685 | 1e-95 | BLH6_ARATH; BEL1-like homeodomain protein 6 | ||||
TrEMBL | A0A314L3F3 | 0.0 | A0A314L3F3_NICAT; Bel1-like homeodomain protein 1 | ||||
STRING | XP_009773899.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1478 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 8e-93 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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