PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01697g13006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 216aa    MW: 23624.8 Da    PI: 5.1987
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01697g13006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00014163123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              y+C+ C + F++   L  H+++H
  Niben101Scf01697g13006.1 41 YTCTFCRREFRSAQALGGHMNVH 63
                              9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.10.110.102.7E-42454IPR001781Zinc finger, LIM-type
SuperFamilySSF576672.12E-63868No hitNo description
PROSITE profilePS5015711.1574168IPR007087Zinc finger, C2H2
SMARTSM003550.00664163IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-54164IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MWNTKQSTHN TVEDDDDSWE VRAFEEDTVN AMGTTWPPRS YTCTFCRREF RSAQALGGHM  60
NVHRRDRARL HQAPPLASNS NHTSSPNANS TLLIPTQEFV TNGGLCLLYS FPNPNGSVFN  120
PTLTKSCTNN NSPSTFLSIS PFPTNNLISP CPPPPSLSFP INGPSPINTS FNISEPSTSN  180
TSNDNNPDYG SSKRDSATEE TIDLELRLGL GSSLTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-133663229superman protein
2l1o_A1e-133663229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018622910.11e-118PREDICTED: uncharacterized protein LOC104086509
TrEMBLA0A1S3YJP91e-112A0A1S3YJP9_TOBAC; uncharacterized protein LOC107776849
STRINGXP_009589081.11e-118(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-35C2H2 family protein