PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01573g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 368aa    MW: 40924.9 Da    PI: 10.4913
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01573g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.45e-1561148186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpy 81 
                               +W++  + +Li+a  e+  +l+rg+lk+++W++v++ + +++ ++++pk   qCk++++ ++k+yk +k    ++  +  s++p+
  Niben101Scf01573g00004.1  61 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKDVADIVsSREDYRKTPKtdiQCKNRIDTVKKKYKLEKSKIASG--QGPSKWPF 143
                               7*************************************856666666644449********************98..56668*** PP

                  trihelix  82 fdqle 86 
                               f++l+
  Niben101Scf01573g00004.1 144 FEKLD 148
                               ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.9E-2659150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEHDGSRSPE SPISNGRITV TVASAPPPQN TLTLALPMQQ PQPLRTSGGS GGGGGGGRED  60
CWSEGATGVL IDAWGERYLE LSRGNLKQKH WKDVADIVSS REDYRKTPKT DIQCKNRIDT  120
VKKKYKLEKS KIASGQGPSK WPFFEKLDQL IGPTAKINPI VAAGGVGPSN LYSSNQKLQV  180
PMGIPMGVRP LPHLRPHQQL QSQQQKQKQS FRKRPHVDSD TSESESEPEL SPDSTDSFPP  240
GTFQRKRPRI QRELMNSSAM RQGTRGGSGE ASGKGKNWGN SVRELTRAIL KFGEAYEQAE  300
SAKIQQMVEM EKQRMKFAKE LELQRMQFFM NTQLELSQLK NHRRVGNSNH RSNNHTTTAN  360
NHNSSDSS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770839.10.0PREDICTED: uncharacterized protein LOC104221462
RefseqXP_016488008.10.0PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG81e-108ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1S4BGL20.0A0A1S4BGL2_TOBAC; trihelix transcription factor ASIL2-like
TrEMBLA0A1U7W8530.0A0A1U7W853_NICSY; uncharacterized protein LOC104221462
STRINGXP_009770839.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103321823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.19e-63sequence-specific DNA binding transcription factors