PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01543g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 377aa    MW: 42441.3 Da    PI: 4.454
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01543g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-19130180256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                               +++GVr+++ +grW+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g+
  Niben101Scf01543g03001.1 130 KFRGVRQRP-WGRWAAEIRDPA----RrVRLWLGTYDTAEEAAMVHDNAAIKLHGP 180
                               89*******.**********82....35**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-28129186IPR001471AP2/ERF domain
PfamPF008472.0E-12130179IPR001471AP2/ERF domain
SMARTSM003801.9E-36130195IPR001471AP2/ERF domain
CDDcd000182.95E-32130186No hitNo description
PROSITE profilePS5103223.143130187IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-21130186IPR016177DNA-binding domain
PRINTSPR003678.6E-10131142IPR001471AP2/ERF domain
PRINTSPR003678.6E-10153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDHSMLCPIK YTEHKKTIRK VTKPAFIKLK KITETRKFSE YIPTIPRTVR LSVTDPDATD  60
SSSDEEELFG RKRVKRYINE ISIETSPIND VKPLNRGKAI KKRAAEASTP KQKALKVKVV  120
QPPPDGTVRK FRGVRQRPWG RWAAEIRDPA RRVRLWLGTY DTAEEAAMVH DNAAIKLHGP  180
DALTNFITPP TKPEEVNVAS NSGYESGDES HNLSSPTSVL RFRTSLSSEE AEQQSGSEPI  240
LEETNGDVCC PLVEEEPVLD SMDNSDQTVE HFECQGETSM LIPDYSNDYL PTDVPFLDDF  300
FNFEAAEQTL FDETTSFAND LCTSYDDVSS WNFANDLLLD HEIVKLEDSF EDLGSLEVDN  360
YFSDIGDFSS VDALLAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19129186159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-19129186462ATERF1
3gcc_A3e-19129186462ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791967.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A1U7XIT50.0A0A1U7XIT5_NICSY; ethylene-responsive transcription factor CRF4-like
STRINGXP_009791967.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-61cytokinin response factor 4