PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf01539g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 27250.5 Da PI: 9.3261 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 60 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg++ t+e+Aa+a++ a++++++ Niben101Scf01539g00001.1 60 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYSTPEMAARAHDVAALSIKK 110 68*****998.**********843...6**********************99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.7E-13 | 60 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.392 | 61 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-30 | 61 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.7E-33 | 61 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-20 | 61 | 119 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.68E-29 | 62 | 120 | No hit | No description |
PRINTS | PR00367 | 4.6E-10 | 62 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-10 | 84 | 100 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
KSEQSKYTQS HTDFFFSSSS VLTFNKYSHS SKKAYINQKI HSRMTKRKIK QSANTGNRHP 60 VYRGVRMRSW GKWVSEIREP RKKSRIWLGT YSTPEMAARA HDVAALSIKK NSSILNFPHL 120 VNSLPRPISL SPRDVQVAAA KAASMEEPPI SSISSSNSSS SSDCTLETIT SASDVELGEI 180 IELPSLEGSF DLNESKTELR LSDSVDGWLC APWWAPDSDF GEYLLEQDAV GESLIRSNFE 240 RQK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-19 | 54 | 122 | 7 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019240476.1 | 1e-122 | PREDICTED: dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q9LYD3 | 8e-57 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A1J6KLY8 | 1e-121 | A0A1J6KLY8_NICAT; Dehydration-responsive element-binding protein 3 | ||||
STRING | XP_009776195.1 | 1e-117 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11590.1 | 3e-58 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|