PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01529g04008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HSF

Protein Properties

Length: 394aa MW: 45583.3 Da PI: 5.3924

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01529g04008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	99.3	3.6e-31	80	172	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 F+ k+ye+l d +++ lisw+ +g+sf+++d ++fa +vLp++F+h+n++SFv QLn YgF+k++ ++ eF+h+ F Niben101Scf01529g04008.1 80 FVLKIYEMLADIQFNPLISWNGKGTSFIIHDCHKFAAEVLPRFFRHNNISSFVCQLNCYGFRKISWDK---------YEFQHECF 155 9***************************************************************99.........78** PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkkse 103 ++gk + l++ikrk s+ Niben101Scf01529g04008.1 156 QRGKGQWLKNIKRKGSK 172 ***********9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	7.1E-39	76	169	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	6.2E-31	77	169	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	4.76E-29	77	169	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	6.2E-13	80	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.5E-27	80	169	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-13	118	130	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-13	131	143	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MKSDKGKGKM TNNIGELLEE WYEDEGLEDV QIDISMLEND DYQGDNTNNQ RIHGSVTGAP 60 QHRLGVRNSR RNLQKRACPF VLKIYEMLAD IQFNPLISWN GKGTSFIIHD CHKFAAEVLP 120 RFFRHNNISS FVCQLNCYGF RKISWDKYEF QHECFQRGKG QWLKNIKRKG SKKSDMNKQP 180 QEQGIVETVA VTMEKEIEEI REEQNAMRKE IIMLHQQLDI LEKELEDNTK QARNHVSSKK 240 AQILKYLLGP LFECIGEVGG SEVSRGLEEE EKQGDEIEDG VENRGEKRKK QVEEELQGKH 300 EGSKDVSDFR SDSDLRKMLM DEMDMNNLAQ EQPDNFLEPE EQAQGPSFWI DYVEKLDHKA 360 ILSGVGPAVS HSQENHTVKL FHVCSLLNYN FIKS

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MKSDKGKGKM TNNIGELLEE WYEDEGLEDV QIDISMLEND DYQGDNTNNQ RIHGSVTGAP  60
QHRLGVRNSR RNLQKRACPF VLKIYEMLAD IQFNPLISWN GKGTSFIIHD CHKFAAEVLP  120
RFFRHNNISS FVCQLNCYGF RKISWDKYEF QHECFQRGKG QWLKNIKRKG SKKSDMNKQP  180
QEQGIVETVA VTMEKEIEEI REEQNAMRKE IIMLHQQLDI LEKELEDNTK QARNHVSSKK  240
AQILKYLLGP LFECIGEVGG SEVSRGLEEE EKQGDEIEDG VENRGEKRKK QVEEELQGKH  300
EGSKDVSDFR SDSDLRKMLM DEMDMNNLAQ EQPDNFLEPE EQAQGPSFWI DYVEKLDHKA  360
ILSGVGPAVS HSQENHTVKL FHVCSLLNYN FIKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-23	80	169	29	129	Heat shock factor protein 1
5d5v_B	2e-23	80	169	29	129	Heat shock factor protein 1
5d5v_D	2e-23	80	169	29	129	Heat shock factor protein 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009790212.1	0.0	PREDICTED: heat stress transcription factor A-7b-like
TrEMBL	A0A1U7XDS2	0.0	A0A1U7XDS2_NICSY; heat stress transcription factor A-7b-like
STRING	XP_009790212.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14099	12	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03720.1	2e-28	heat shock transcription factor A3