PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01514g02006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 710aa    MW: 79056.1 Da    PI: 8.5062
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01514g02006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.82e-32214270259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               dDgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++++ei+Y+g Hnh+
  Niben101Scf01514g02006.1 214 DDGYTWRKYGQKHVKGSEFPRSYYKCTQQNCPVKKKVERSP-DGQITEIVYKGAHNHH 270
                               8****************************************.***************8 PP
2WRKY104.46.1e-33439497159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vkg+++prsYY+CtsagCpv+k+ver+ ++ k v++tYeg+Hnhe
  Niben101Scf01514g02006.1 439 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCPVRKHVERAPDNLKSVITTYEGKHNHE 497
                               59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-28207271IPR003657WRKY domain
SuperFamilySSF1182903.66E-25210271IPR003657WRKY domain
SMARTSM007743.9E-36213271IPR003657WRKY domain
PfamPF031062.3E-25214270IPR003657WRKY domain
PROSITE profilePS5081122.814214272IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.1E-36424499IPR003657WRKY domain
SuperFamilySSF1182902.75E-28432499IPR003657WRKY domain
PROSITE profilePS5081137.321434499IPR003657WRKY domain
SMARTSM007744.0E-38439498IPR003657WRKY domain
PfamPF031069.7E-26440497IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MERNIGEPID DWNSQIVRNL DSETMLDTQE SDVKVEERIG NAENGSLFPN NNNNNNNKRG  60
SIAKRRAAKY DFNASTISIA QFRVTTTSMP EMSPPTARPT FLTIPPGLTP AALLDSPVML  120
PNSLAPQSPT TGSFQISTIN QENTTKTTQK ARDHFEFPVE SPKATALKNC SLETNVQQNM  180
SCIGLTNIHD SGNSGRRANQ FEQRSNNITS NGSDDGYTWR KYGQKHVKGS EFPRSYYKCT  240
QQNCPVKKKV ERSPDGQITE IVYKGAHNHH KSQPPRRATM SSTANGLGEM SEGNIGGSNS  300
WQFGRNKDVR APSDLDRTSS ASVLTDVSHP LMLNYQNNSM NVFESATPEP SSTLGSRDDE  360
DEDRATEGST SLGGDVDDYA FDHKRRLLNP LCVYMFVCVS KLLIGLRRRE FYSAETSLSS  420
RTAREPRVVV QIESEIDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTSAGC PVRKHVERAP  480
DNLKSVITTY EGKHNHEVPT ANKTNCAISG NQALTSTSKT HKVSNSGMQV QDCNFQFNRK  540
PFDYVRPSFV DLRFGAASSI YDLKFPTNLH SPLSYASFLL SPNHMQMPEF PLPISLPFGP  600
DIVPPIGGFH FNDLPLTPND VSSIAGEDQM YIHDNTNNNK SSRLVKGNEE IKNENLCDHQ  660
NGASSALSIC AKMQNFIPKH SSYPPAKIQN FNLKDHSISK PKAALRRVQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-31214499877Probable WRKY transcription factor 4
2lex_A1e-31214499877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231201.10.0PREDICTED: WRKY transcription factor WRKY24-like isoform X1
TrEMBLA0A1J6J1A00.0A0A1J6J1A0_NICAT; Putative wrky transcription factor 2
STRINGXP_009598832.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57672237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-86WRKY DNA-binding protein 2