PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01460g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 310aa MW: 34853.2 Da PI: 8.0894 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 47.8 | 2.3e-15 | 232 | 257 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yG++C+FaHg Niben101Scf01460g00010.1 232 FKTELCNKWQETGACPYGNNCQFAHG 257 79***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-19 | 226 | 263 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-11 | 228 | 263 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.7E-9 | 231 | 258 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.145 | 231 | 259 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-12 | 232 | 257 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-10 | 265 | 296 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-8 | 266 | 299 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.981 | 269 | 297 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 269 | 296 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MQREISTTAG HGDAYNYNTP SSPPSFLSQP NAFNLTSLYS SILFPQNQNS QSLIDQHYHE 60 DLMDRHNRVL SQLLEAQKKT LALRQENINL KMANFNINNQ LSLLLKASSS DYGPGLGLDS 120 VVGGIRRMRI GVGEEETSSD GHSWEDFVAD RHLSPTSVMD SCRSEGLDRV LLPKSISVRS 180 NGYLKAIHAA GGSRPQTSIK SVHTAQKVYV KGGGNIKEEQ PLELEVYNQG MFKTELCNKW 240 QETGACPYGN NCQFAHGIEE LRPILRHPRY KTEVCRMVLN GDPCPYGHRC HFRHTFTDQE 300 KLMRSLNTRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 8e-22 | 232 | 294 | 4 | 66 | Butyrate response factor 2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019245959.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 15-like | ||||
Swissprot | Q9C9F5 | 2e-66 | C3H15_ARATH; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A1J6IG39 | 0.0 | A0A1J6IG39_NICAT; Zinc finger ccch domain-containing protein 15 | ||||
STRING | XP_009774204.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9140 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 9e-68 | C3H family protein |