PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01451g02003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 700aa MW: 76693.3 Da PI: 6.6875

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01451g02003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.8	2.1e-09	388	425	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Niben101Scf01451g02003.1 388 FEHflHPYPKDSDKMMLAKQTGLTRSQVSNWFINARVR 425 554458******************************88 PP
2	BELL	113.5	1.1e-36	252	323	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV++rY++y++q+q vis e++ag+gsak Yt+lAl++iS++FrcLkdai++qi Niben101Scf01451g02003.1 252 ERQEIQMKKAKLVNMLDEVEQRYRHYHQQMQSVISWLEQAAGIGSAKTYTALALQTISKQFRCLKDAITGQI 323 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.0E-55	177	321	IPR006563	POX domain
Pfam	PF07526	4.0E-46	186	320	IPR006563	POX domain
PROSITE profile	PS50071	12.001	366	429	IPR001356	Homeobox domain
CDD	cd00086	6.23E-12	369	430	No hit	No description
SMART	SM00389	1.9E-9	369	433	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.11E-16	370	435	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.6E-28	372	435	IPR009057	Homeodomain-like
Pfam	PF05920	3.8E-18	386	425	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009610	Biological Process	response to symbiotic fungus
GO:0009737	Biological Process	response to abscisic acid
GO:0010197	Biological Process	polar nucleus fusion
GO:0010201	Biological Process	response to continuous far red light stimulus by the high-irradiance response system
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence Send to blast
MAAYFHGNSE IQEGNDGLQT LLLMNPAGYV GFSETQHHQQ PAAEGSNLVF FNSNPPGNSL 60 NLPHAPPSSQ QQFVGIPLAT SAFTAPSSSQ GGTTTPTVHS HHDISALHGF LPRSHEYGFY 120 NPSSDITEAR EVTRAQQQGL SLSLSSQQPR FGNFRPEHEE LMTSVSPTAG GGSSSASAVQ 180 SVPLSPKYLK AAQELLDEVV NVGKAVKTST TDEDFIDGQK SKINGESSGN MATAGQGGES 240 SNRDGAELST AERQEIQMKK AKLVNMLDEV EQRYRHYHQQ MQSVISWLEQ AAGIGSAKTY 300 TALALQTISK QFRCLKDAIT GQIRSASKTL GEEDSFGGKI EGSRLKFVDN QIRQQRALQQ 360 LGMIQHNAWR PQRGLPERAV SFLRAWLFEH FLHPYPKDSD KMMLAKQTGL TRSQVSNWFI 420 NARVRLWKPM VEEMYLEEIK EQEQNGSDVK KTNKLGEQNE DSTSRSIAPQ EKSPGSDSQN 480 KSFLSKQDNN LENLNPASTI PMSNSTSISP AGLSIRNNTG FNLIGSPEIK RINIGQGSPK 540 KPRSNEMLHS PNSVPSINMD VKPNEEQMLI KFGDDRQNRD GFSLMGGPTN FMAGFGSYPI 600 GEIGRFSTEQ FSAPYSTSGT VSLTLGLPHT ENLSMSATHH SFLPIPTQSI QIGRGVEIDE 660 ANEFGSLNTP TSAHSTSVYE NFNIQNRKRF AAPLLPDFVA

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence Send to blast

MAAYFHGNSE IQEGNDGLQT LLLMNPAGYV GFSETQHHQQ PAAEGSNLVF FNSNPPGNSL  60
NLPHAPPSSQ QQFVGIPLAT SAFTAPSSSQ GGTTTPTVHS HHDISALHGF LPRSHEYGFY  120
NPSSDITEAR EVTRAQQQGL SLSLSSQQPR FGNFRPEHEE LMTSVSPTAG GGSSSASAVQ  180
SVPLSPKYLK AAQELLDEVV NVGKAVKTST TDEDFIDGQK SKINGESSGN MATAGQGGES  240
SNRDGAELST AERQEIQMKK AKLVNMLDEV EQRYRHYHQQ MQSVISWLEQ AAGIGSAKTY  300
TALALQTISK QFRCLKDAIT GQIRSASKTL GEEDSFGGKI EGSRLKFVDN QIRQQRALQQ  360
LGMIQHNAWR PQRGLPERAV SFLRAWLFEH FLHPYPKDSD KMMLAKQTGL TRSQVSNWFI  420
NARVRLWKPM VEEMYLEEIK EQEQNGSDVK KTNKLGEQNE DSTSRSIAPQ EKSPGSDSQN  480
KSFLSKQDNN LENLNPASTI PMSNSTSISP AGLSIRNNTG FNLIGSPEIK RINIGQGSPK  540
KPRSNEMLHS PNSVPSINMD VKPNEEQMLI KFGDDRQNRD GFSLMGGPTN FMAGFGSYPI  600
GEIGRFSTEQ FSAPYSTSGT VSLTLGLPHT ENLSMSATHH SFLPIPTQSI QIGRGVEIDE  660
ANEFGSLNTP TSAHSTSVYE NFNIQNRKRF AAPLLPDFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	6e-16	375	433	5	63	Homeobox protein Meis2
3k2a_B	6e-16	375	433	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019250358.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-161	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A1J6I7N5	0.0	A0A1J6I7N5_NICAT; Bel1-like homeodomain protein 1
STRING	XP_009787672.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1478	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-150	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]