PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01349g02003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 379aa    MW: 42812.1 Da    PI: 6.9065
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01349g02003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS265.41.9e-8133649373
                      GRAS   9 AeavssgdlelaqalLarlselaspdgd....pmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevs 88 
                               Aea+++g+l la+ ++ rl+++ s + +    p+ Rla yft+++  r ++ s++el      +++ + +ss++l+a+++++e+s
  Niben101Scf01349g02003.1   3 AEAIEAGNLDLASVVVLRLNTILSDQENrensPIDRLALYFTQGMLYRSLSnSSHELL----NQNQYQPESSSSLTAFQMLQEIS 83 
                               89******************996666544555************98776662444444....33333445789999********* PP

                      GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173
                               P++kf+h+taNqaIlea++g++ +Hi+Dfdi++G+QWp+L+  L +R +   slRiT+v+  +++++  +e+tg+rL++fA++++
  Niben101Scf01349g02003.1  84 PYVKFAHFTANQAILEATKGSQGIHILDFDIMEGIQWPPLMVDLVERGNTNSSLRITVVVV-DKNNSFHVEKTGKRLEEFANSIN 167
                               ***********************************************************99.66799****************** PP

                      GRAS 174 vpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesF 253
                               +pf f+ +  ++ edl  +++  v+++ +l+ n++++  +++++  sl +    + + +++lsPk+vv+ve+e    ++ +s sF
  Niben101Scf01349g02003.1 168 LPFMFDQVFLTKKEDL--QNIqGVESHNNLIANVMIHQLHIPQRGSSLVK---IFFNGLRRLSPKIVVLVEEElfnlTKIQSMSF 247
                               *******977777777..5552567799********9999*988888888...9*******************8775566999** PP

                      GRAS 254 lerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakq 336
                               +e f+eal++y+++ ds+  +++     + +++E+e+lg +i ++v +   ++ er+    kW+e l +  GF+++p+s++++ q
  Niben101Scf01349g02003.1 248 VEFFCEALHHYTTISDSILGGFGGGYkLALRVIEKEFLGIRILDCVRQFPCDKLERE----KWSEGLYSlKGFRQIPMSSSNVRQ 328
                               ******************6666665538999********************966665....6***997658************** PP

                      GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               ak+l++ ++  gy v++e+  l l+Wk+rpL+ +S W
  Niben101Scf01349g02003.1 329 AKHLVSLFS-GGYWVQNEHCKLALCWKSRPLTIASIW 364
                               *********.89************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.7991346IPR005202Transcription factor GRAS
PfamPF035146.5E-793364IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGAEAIEAGN LDLASVVVLR LNTILSDQEN RENSPIDRLA LYFTQGMLYR SLSNSSHELL  60
NQNQYQPESS SSLTAFQMLQ EISPYVKFAH FTANQAILEA TKGSQGIHIL DFDIMEGIQW  120
PPLMVDLVER GNTNSSLRIT VVVVDKNNSF HVEKTGKRLE EFANSINLPF MFDQVFLTKK  180
EDLQNIQGVE SHNNLIANVM IHQLHIPQRG SSLVKIFFNG LRRLSPKIVV LVEEELFNLT  240
KIQSMSFVEF FCEALHHYTT ISDSILGGFG GGYKLALRVI EKEFLGIRIL DCVRQFPCDK  300
LEREKWSEGL YSLKGFRQIP MSSSNVRQAK HLVSLFSGGY WVQNEHCKLA LCWKSRPLTI  360
ASIWVPTSSS SSPSSSISF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-41336827382Protein SCARECROW
5b3h_A3e-41336826381Protein SCARECROW
5b3h_D3e-41336826381Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761269.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A1U7VG120.0A0A1U7VG12_NICSY; nodulation-signaling pathway 2 protein-like
STRINGXP_009761269.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-45GRAS family protein