PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01281g05001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 445aa    MW: 48648.8 Da    PI: 6.8491
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01281g05001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.2e-31231289259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Niben101Scf01281g05001.1 231 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 289
                               699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.673225291IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-30229291IPR003657WRKY domain
SuperFamilySSF1182903.79E-26229291IPR003657WRKY domain
SMARTSM007741.4E-37230290IPR003657WRKY domain
PfamPF031069.4E-26232289IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MENNYQGDLA DIFLGNSGAN NITTTSGESS STTVAAVVTD EWLGQFPSHP INFPASRIEE  60
PSIQDFGDPF CNLRDPLFHD IDMMPAGSNL FTSNKNNNNN NNNNINLSGP KILEETEMKS  120
RPTGNIFSRM LQISPTIKLA TAMSPCNSPM MGAVALQQPS TVIAGGGALV ANDAIISPNS  180
SKTCLVENSG LQISSPRNTG IKRRKSQAKR VVCIPAPAPA NSRQGGEIVP SDLWAWRKYG  240
QKPIKGSPYP RGYYRCSSSK GCSARKQVER SRTDPNMLVI TYTSEHNHPW PTQRNALAGS  300
TRSQPNNSKH TTTSTSKNNT NSKDDQQNNT STTVAQVNIS KVKEEAAELQ DLRHDHQQQQ  360
QLAVEMHDVE FSKDSYQPIL PDSSSNHSHE DFFADLVELE ADPLNLLFAK TLSGDVNEAG  420
QKKAIDAFNL YGWNGNNNNK SQANP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-25205292280Disease resistance protein RRS1
5w3x_D1e-25205292280Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622546.10.0PREDICTED: probable WRKY transcription factor 14
RefseqXP_016470815.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLA0A1S4A2I60.0A0A1S4A2I6_TOBAC; probable WRKY transcription factor 14
STRINGXP_009622546.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.18e-86WRKY DNA-binding protein 14