PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01249g02006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 360aa MW: 40365.5 Da PI: 6.1553

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01249g02006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.3	0.00031	206	246	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r RR+++ ++ L +llP++ kK++ ++L +A +Y+k Lq Niben101Scf01249g02006.1 206 RMRRQKLSEKTRSLEKLLPWD-----KKMDTDTMLGEAYKYVKILQ 246 89****************9.....89************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.607	196	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-8	204	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-6	206	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00138	206	250	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MASDEAFLPL MASDEAFING LYNGLSYQSV LSLSLDHYNH GEEVKPLSRS YFQPSLAKDM 60 PYAAAASQMQ QSSAAFDFST TRDFPWVEET ENIFDADQKL KSPKLEPVTD NLQLYPYSNN 120 EIFLNEPPFN YFSNGVSDDS GLGYGRLPDL RCLEMPNYLD FHLGDSSSTV NGVEPVSVNS 180 QVLMSNQLST MPKSCKQSAY GSSTTRMRRQ KLSEKTRSLE KLLPWDKKMD TDTMLGEAYK 240 YVKILQAQVR VLQSMPVLVE GGASSSSSGS EDRNGKSSYV NEVKAYSFYG PLARLNRQQL 300 LQVVLNSPVA QKYLYSKGCC VYSAEQLLQL RRIAQRDALY RQRCFTPACS LKPDHSPVYG

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MASDEAFLPL MASDEAFING LYNGLSYQSV LSLSLDHYNH GEEVKPLSRS YFQPSLAKDM  60
PYAAAASQMQ QSSAAFDFST TRDFPWVEET ENIFDADQKL KSPKLEPVTD NLQLYPYSNN  120
EIFLNEPPFN YFSNGVSDDS GLGYGRLPDL RCLEMPNYLD FHLGDSSSTV NGVEPVSVNS  180
QVLMSNQLST MPKSCKQSAY GSSTTRMRRQ KLSEKTRSLE KLLPWDKKMD TDTMLGEAYK  240
YVKILQAQVR VLQSMPVLVE GGASSSSSGS EDRNGKSSYV NEVKAYSFYG PLARLNRQQL  300
LQVVLNSPVA QKYLYSKGCC VYSAEQLLQL RRIAQRDALY RQRCFTPACS LKPDHSPVYG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019251433.1	0.0	PREDICTED: transcription factor bHLH117
TrEMBL	A0A1J6ILW4	0.0	A0A1J6ILW4_NICAT; Transcription factor bhlh117
STRING	XP_009790451.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11250	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	7e-15	bHLH family protein