PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01241g08005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 578aa MW: 63140.7 Da PI: 8.7172

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01241g08005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Niben101Scf01241g08005.1 68 FVCEVCNKGFQREQNLQLHRRGH 90 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	8.0E-6	67	90	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.76E-7	67	90	No hit	No description
PROSITE profile	PS50157	11.094	68	90	IPR007087	Zinc finger, C2H2
Pfam	PF12171	3.8E-5	68	90	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0041	68	90	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	70	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	109	139	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.6E-4	132	165	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.76E-7	139	164	No hit	No description
SMART	SM00355	160	144	164	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MAAGTSSAVF LAMREEEQNQ QMKQQQQEEF LIQQQAPQKK RRNQPGTPNP DAEIIALSPK 60 TLMATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKS TKEVKRKVYL CPEPTCVHHD 120 PSRALGDLTG IKKHYSRKHG EKKYKCEKCC KKYAVQSDWK AHTKTCGTRE YKCDCGTLFS 180 RRDSFITHRA FCDALAQESA RNPPSLSSIG SHLYGSSNNM SLGLSKMGSQ ISDHSNSTDI 240 LHFGSSSDIK TGGQFDHNNL MGTTSIGASA FRPSTSFFLP TDQTNHQDYA VNKPSIHGLM 300 QLPDLHNNGN NNSSPSVASM FNLNFFQNSN NNSENVGSHG NSNISAGGGG LLLPSHQFSN 360 SSGDGSNNSS NMFSAGSLLG TDHHISSSIP SLYGNHLNNN SSSASPAPPM SATALLQKAA 420 QMGSTTSYNN MNNSSASLLK AFGSSSSATK SDIHQPPPVN FGSVVYGDPL SENHLHDLVV 480 NAYGNNDQNQ QNDYGNNFEQ QPPQKKQMIN NFSMENMGTE QVNRLTRDFL GVGEIVRSMS 540 GGFGSSHRDQ QQMSTLDSKA APPPQSHHQS FGGAGNFQ

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MAAGTSSAVF LAMREEEQNQ QMKQQQQEEF LIQQQAPQKK RRNQPGTPNP DAEIIALSPK  60
TLMATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKS TKEVKRKVYL CPEPTCVHHD  120
PSRALGDLTG IKKHYSRKHG EKKYKCEKCC KKYAVQSDWK AHTKTCGTRE YKCDCGTLFS  180
RRDSFITHRA FCDALAQESA RNPPSLSSIG SHLYGSSNNM SLGLSKMGSQ ISDHSNSTDI  240
LHFGSSSDIK TGGQFDHNNL MGTTSIGASA FRPSTSFFLP TDQTNHQDYA VNKPSIHGLM  300
QLPDLHNNGN NNSSPSVASM FNLNFFQNSN NNSENVGSHG NSNISAGGGG LLLPSHQFSN  360
SSGDGSNNSS NMFSAGSLLG TDHHISSSIP SLYGNHLNNN SSSASPAPPM SATALLQKAA  420
QMGSTTSYNN MNNSSASLLK AFGSSSSATK SDIHQPPPVN FGSVVYGDPL SENHLHDLVV  480
NAYGNNDQNQ QNDYGNNFEQ QPPQKKQMIN NFSMENMGTE QVNRLTRDFL GVGEIVRSMS  540
GGFGSSHRDQ QQMSTLDSKA APPPQSHHQS FGGAGNFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-33	140	201	3	64	Zinc finger protein JACKDAW
5b3h_F	5e-33	140	201	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00255	DAP	Transfer from AT2G02070	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786293.1	0.0	PREDICTED: zinc finger protein JACKDAW-like
Refseq	XP_016482767.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1
Swissprot	Q9ZUL3	1e-127	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A1S4B1G4	0.0	A0A1S4B1G4_TOBAC; protein indeterminate-domain 5, chloroplastic-like isoform X1
TrEMBL	A0A1U7X614	0.0	A0A1U7X614_NICSY; zinc finger protein JACKDAW-like
STRING	XP_009786293.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-105	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]