PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01222g01012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 226aa    MW: 25522.1 Da    PI: 9.36
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01222g01012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-1978132256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               rk+ ++tkeq   Lee F++n++++ +++e LA++l+L+ rqV vWFqNrRa+ k
  Niben101Scf01222g01012.1  78 RKKLRLTKEQSFLLEESFRQNHTLNPKQKEALAMQLKLKPRQVEVWFQNRRARSK 132
                               78889************************************************98 PP
2HD-ZIP_I/II115.23.8e-3778166189
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kk+rl+keq+ lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E ++e+Lkr++ +l+e+n+rL+kev+
  Niben101Scf01222g01012.1  78 RKKLRLTKEQSFLLEESFRQNHTLNPKQKEALAMQLKLKPRQVEVWFQNRRARSKLKQTELECEYLKRWFGSLTEQNRRLKKEVQ 162
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLre 89 
                               eLr+
  Niben101Scf01222g01012.1 163 ELRA 166
                               **94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-2066135IPR009057Homeodomain-like
PROSITE profilePS5007117.28174134IPR001356Homeobox domain
SMARTSM003897.9E-1776138IPR001356Homeobox domain
CDDcd000862.07E-1577135No hitNo description
PfamPF000467.7E-1778132IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.4E-1878132IPR009057Homeodomain-like
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
PfamPF021833.6E-10134168IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.2E-21134177IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAAMPENSTC LELTISIPGS SSSSSFPSSG EGGGYNLMRE LDINQVPSSG NINEEEISIE  60
EEEEESCNIS GVNGGRPRKK LRLTKEQSFL LEESFRQNHT LNPKQKEALA MQLKLKPRQV  120
EVWFQNRRAR SKLKQTELEC EYLKRWFGSL TEQNRRLKKE VQELRAMKVG PPTVLSPHSC  180
QPRPASTLTM CPHCERLNLL RRARSTMVVD KVGPTKGTIN HNLSAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17581RPRKKLR
2126134RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802790.11e-105PREDICTED: homeobox-leucine zipper protein HOX3-like
RefseqXP_016451193.11e-105PREDICTED: homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX12e-76HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH382e-76HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A1S3YGN01e-104A0A1S3YGN0_TOBAC; homeobox-leucine zipper protein HOX3-like
TrEMBLA0A1U7YVJ81e-104A0A1U7YVJ8_NICSY; homeobox-leucine zipper protein HOX3-like
STRINGXP_009802790.11e-104(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.11e-60homeobox-leucine zipper protein 17