PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01220g02008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 957aa MW: 108160 Da PI: 7.9363

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01220g02008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	63.5	3.4e-20	821	917	2	95
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 +kvl++sdv+++gr+vlpk+ ae+h +++++ ++ +++ed ++r+W++k+++ ++ks++y+l+ ++ +Fv+angL+egDf+v Niben101Scf01220g02008.1 821 QKVLKQSDVGNLGRIVLPKREAETHlpQLESRDGISISMEDiGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVRANGLQEGDFIV 904 79***********************999999****7778***99777777777777.************** PP EEE-SS.SEE..EEE CS B3 82 Fkldgr.sefelvvk 95 + + ++++++++ Niben101Scf01220g02008.1 905 VY--ADiKCGKYLIR 917 ..45588877766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.9E-27	814	925	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10015	8.43E-33	818	919	No hit	No description
SuperFamily	SSF101936	9.61E-22	819	912	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	4.6E-18	820	922	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.659	820	922	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.0E-16	821	916	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 957 aa Download sequence Send to blast
MKRELQQLYG HNNNNQEMHG FENISMVRAD DDTQRQHQQQ QPTDFDPMDD TYIWLNNGNE 60 EQHHFNVNDT NYINFSTDFP PLPDFPCMSS SSSTSNSPPT DSLSSTYAEE DHDFHKKIQF 120 DNTINGDQDC LNVIENLGYM DLIDGNHDFL DPMSPFENPQ KHQQQQEGKV QFENEQLSIF 180 QGDSELALMF FEWLKQNKDN ISAEDMRSIK LKRSTIESAS KRLGSTKEGK KQLLRLILDW 240 VEQHRLQKKQ MSEAAANQET FQISAPNSNF HYNTVGIDPK ACFYPSSWMA TVAYNIPNFS 300 DSASVMAGQI PGCFGDPYTN GSLFVSPFNQ TMSGSASSPA STEYQPMDYT RSWSPSQFAV 360 ASASQYIKFP DYSDSANNVA VVDQPRSLFG TQCPYQLLDG IGERLARLGS KEARKNRMAR 420 QRRLPLHHYR HQVQNQRQIN DQSVMMGGEN CAIDTSNNPG NWVYWPSATA AAPPMMMGPQ 480 ADSPQSHSTE KQAVRSQNHH KHRLADKRQL KRSTIESASK RLGSTKEGKK QLLRLILDWV 540 EQHRLQKKQM SEAAANQETF QISAPNSNFH YNTVGIDPKA CFYPSSWMAT VAYNIPNFSD 600 SASVMAGQIP GCFGDPYTNG SLFVSPFNQT MSGSASSPAS TEYQPMDYTR SWSPSQFAVA 660 SASQYIKFPD YSDSANNVAV VDQPRSLFGT QCPYQLLDGI GERLARLGSK EARKNRMARQ 720 RRLPLHHYRH QVQNQRQIND QSVMMGGENC AIDTSNNPGN WVYWPSATAA APPMMMGPQA 780 DSPQSHSTEK QAVRSQNHHK HRLADKRQAC KTEKNLKFLL QKVLKQSDVG NLGRIVLPKR 840 EAETHLPQLE SRDGISISME DIGTSRVWNM KYRFWPNNKS RMYLLENTGD FVRANGLQEG 900 DFIVVYADIK CGKYLIRGVK VRQNGPESEG KKPAKKNIRN LSSTAAIALQ LHKQLDS

Sequence ? help Back to Top

Protein Sequence Length: 957 aa Download sequence Send to blast

MKRELQQLYG HNNNNQEMHG FENISMVRAD DDTQRQHQQQ QPTDFDPMDD TYIWLNNGNE  60
EQHHFNVNDT NYINFSTDFP PLPDFPCMSS SSSTSNSPPT DSLSSTYAEE DHDFHKKIQF  120
DNTINGDQDC LNVIENLGYM DLIDGNHDFL DPMSPFENPQ KHQQQQEGKV QFENEQLSIF  180
QGDSELALMF FEWLKQNKDN ISAEDMRSIK LKRSTIESAS KRLGSTKEGK KQLLRLILDW  240
VEQHRLQKKQ MSEAAANQET FQISAPNSNF HYNTVGIDPK ACFYPSSWMA TVAYNIPNFS  300
DSASVMAGQI PGCFGDPYTN GSLFVSPFNQ TMSGSASSPA STEYQPMDYT RSWSPSQFAV  360
ASASQYIKFP DYSDSANNVA VVDQPRSLFG TQCPYQLLDG IGERLARLGS KEARKNRMAR  420
QRRLPLHHYR HQVQNQRQIN DQSVMMGGEN CAIDTSNNPG NWVYWPSATA AAPPMMMGPQ  480
ADSPQSHSTE KQAVRSQNHH KHRLADKRQL KRSTIESASK RLGSTKEGKK QLLRLILDWV  540
EQHRLQKKQM SEAAANQETF QISAPNSNFH YNTVGIDPKA CFYPSSWMAT VAYNIPNFSD  600
SASVMAGQIP GCFGDPYTNG SLFVSPFNQT MSGSASSPAS TEYQPMDYTR SWSPSQFAVA  660
SASQYIKFPD YSDSANNVAV VDQPRSLFGT QCPYQLLDGI GERLARLGSK EARKNRMARQ  720
RRLPLHHYRH QVQNQRQIND QSVMMGGENC AIDTSNNPGN WVYWPSATAA APPMMMGPQA  780
DSPQSHSTEK QAVRSQNHHK HRLADKRQAC KTEKNLKFLL QKVLKQSDVG NLGRIVLPKR  840
EAETHLPQLE SRDGISISME DIGTSRVWNM KYRFWPNNKS RMYLLENTGD FVRANGLQEG  900
DFIVVYADIK CGKYLIRGVK VRQNGPESEG KKPAKKNIRN LSSTAAIALQ LHKQLDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9b_A	7e-37	816	920	1	105	B3 domain-containing transcription factor FUS3
6j9b_D	7e-37	816	920	1	105	B3 domain-containing transcription factor FUS3
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799315.1	0.0	PREDICTED: B3 domain-containing transcription factor ABI3-like
TrEMBL	A0A1U7YKG5	0.0	A0A1U7YKG5_NICSY; B3 domain-containing transcription factor ABI3-like
STRING	XP_009799315.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4270	23	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	2e-91	B3 family protein