PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01159g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 24119 Da PI: 9.8657 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.6e-18 | 103 | 153 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIr p k +r +lg++ t+e+Aa a+++a+ k++g Niben101Scf01159g00002.1 103 RYRGVRRRP-WGKFAAEIRNP---DrKGARLWLGTYETPEDAALAYDQAAYKIRG 153 7********.**********8...3245*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-23 | 103 | 162 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-35 | 103 | 167 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 103 | 162 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.302 | 103 | 161 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.07E-30 | 103 | 163 | No hit | No description |
Pfam | PF00847 | 1.0E-13 | 103 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-13 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-13 | 143 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MYQQTTISDS DLSVLENIKF HLLNDTDFSQ IFSTFDQCFS NAKIINSPNS SFGSSPTEEI 60 SWGDMLTNMN SKSQRVDNLE HKEEAKESHV AARGVHAPQD WNRYRGVRRR PWGKFAAEIR 120 NPDRKGARLW LGTYETPEDA ALAYDQAAYK IRGSKARLNF PHLIGSNISE PVRVAPRRRC 180 LSPEISSSSF SLSFVENVPL KKRKLAENRI RG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-27 | 104 | 167 | 6 | 69 | ATERF1 |
3gcc_A | 5e-27 | 104 | 167 | 6 | 69 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016512690.1 | 1e-136 | PREDICTED: ethylene-responsive transcription factor 13-like | ||||
TrEMBL | A0A1S4DH47 | 1e-135 | A0A1S4DH47_TOBAC; ethylene-responsive transcription factor 13-like | ||||
STRING | XP_009798818.1 | 1e-135 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 1e-45 | ethylene-responsive element binding factor 13 |