PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01154g11014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WOX
Protein Properties Length: 230aa    MW: 26240 Da    PI: 10.0604
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01154g11014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14e-201172157
                              TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              r +R+++t+eql  Lee+++k  r+p+a++++ ++++l    +++ ++V++WFqN++a++++
  Niben101Scf01154g11014.1 11 RPTRWSPTPEQLMFLEEMYRKgLRNPNATQIQNITAHLssygKIEGKNVFYWFQNHKARDRQ 72
                              569*****************99*************************************996 PP
2Wus_type_Homeobox113.79.5e-371373464
         Wus_type_Homeobox  4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                              tRW+PtpeQ++ Lee+y++Glr+Pn+ +iq+ita+L++yGkie+kNVfyWFQN+kaR+rqk
  Niben101Scf01154g11014.1 13 TRWSPTPEQLMFLEEMYRKGLRNPNATQIQNITAHLSSYGKIEGKNVFYWFQNHKARDRQK 73
                              8***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-7678IPR009057Homeodomain-like
PROSITE profilePS5007110.592873IPR001356Homeobox domain
SuperFamilySSF466891.11E-111077IPR009057Homeodomain-like
SMARTSM003893.1E-61077IPR001356Homeobox domain
PfamPF000468.3E-181172IPR001356Homeobox domain
CDDcd000866.22E-51173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSFLKREKLT RPTRWSPTPE QLMFLEEMYR KGLRNPNATQ IQNITAHLSS YGKIEGKNVF  60
YWFQNHKARD RQKIKKKLLA QMNQQQIFSQ YPVDAHGTNT TSTITNTNTN NLFHCPTDHY  120
SHNSSSVVNQ ICRISSTGLL QEGGIKAASS RVLTYLYPTN ISRPVENMEN CMIRPYGKDW  180
VLMMNISPNT LPCCINKPLK TLPLFPISET NGLKEQISTT SSTLSLSFSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618151.11e-144PREDICTED: WUSCHEL-related homeobox 3-like
RefseqXP_016464869.11e-144PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLA0A1S3ZKN41e-143A0A1S3ZKN4_TOBAC; WOX3b
STRINGXP_009618151.11e-143(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.11e-40WOX family protein