PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01150g05007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 687aa MW: 76104.6 Da PI: 6.5723

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01150g05007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.5	2e-29	70	154	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW++qe+ aL+++r+em+ +r+++lk+plWeevs+km++ gf+rs+k+Ckek+en+ k++k++k+g+ ++ + +t+++f+ql Niben101Scf01150g05007.1 70 RWPRQETIALLKIRSEMDLVFRDSSLKGPLWEEVSRKMADLGFHRSAKKCKEKFENVYKYHKRTKDGRASK--ADGKTYRFFEQL 152 8******************************************************************96..66678***** PP trihelix 86 ea 87 ea Niben101Scf01150g05007.1 153 EA 154 85 PP
2	trihelix	103.2	1.9e-32	489	574	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+k ev aLi +r++++ +++++ k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql Niben101Scf01150g05007.1 489 RWPKAEVEALIMLRTQLDVKYQENGPKGPLWEEISAGMKKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQL 572 8*******************************************************************8.99********* PP trihelix 86 ea 87 +a Niben101Scf01150g05007.1 573 DA 574 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0052	67	129	IPR001005	SANT/Myb domain
CDD	cd12203	2.22E-26	69	134	No hit	No description
Pfam	PF13837	2.0E-19	69	155	No hit	No description
PROSITE profile	PS50090	6.888	69	127	IPR017877	Myb-like domain
PROSITE profile	PS50090	7.259	482	546	IPR017877	Myb-like domain
SMART	SM00717	2.6E-4	486	548	IPR001005	SANT/Myb domain
Pfam	PF13837	6.2E-23	488	575	No hit	No description
CDD	cd12203	4.27E-29	488	553	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.3E-4	488	545	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MLGVSGIISS TNSGGGGENP ESGGGAASGG SSEIAIGGGG VSISGGFMTE EDRAIRNMEE 60 GERNSGGGNR WPRQETIALL KIRSEMDLVF RDSSLKGPLW EEVSRKMADL GFHRSAKKCK 120 EKFENVYKYH KRTKDGRASK ADGKTYRFFE QLEALENNPS SHHSLLLPPP ITSSRPPPPP 180 LEATPINMAM PMPSGNANTI NLQLPASQQA TTTVTVSSAP PNNSSNIFVS SHQNTISHQN 240 IPLSSSMAPS SQPSPQPANN PINNLQANTN FPSHDQNISA MSYSTSSSTS SDEDIQRRHK 300 KKRKWKDFFE RLMKDVIDKQ EDLQRRFLET LEKRERDRMV REEAWRVQEV ARMNREHDLL 360 VQERSTAAAK DAAVISFLQK ITEQQNIQIP SNINVAPPSA QVQIQLPENP PPPSETRSQV 420 VHQQTQPTAV LVSPAPTQPS PATPAPISLP ATIPAQSLPL TPPVPAKSVE LTPKSDNGGE 480 GYSPASSSRW PKAEVEALIM LRTQLDVKYQ ENGPKGPLWE EISAGMKKLG YNRNAKRCKE 540 KWENINKYFK KVKESNKKRP EDSKTCPYFH QLDALYKEKA KNETSSSFSN PSASGFALNP 600 ENNPMMPIMA RPEQQWPRPP HHQQPQQHHE STRMDHDHES DNMDQDEDDE EEEDEDEENA 660 YEIVANKQQS SMAAANSTTT TTATTTV

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MLGVSGIISS TNSGGGGENP ESGGGAASGG SSEIAIGGGG VSISGGFMTE EDRAIRNMEE  60
GERNSGGGNR WPRQETIALL KIRSEMDLVF RDSSLKGPLW EEVSRKMADL GFHRSAKKCK  120
EKFENVYKYH KRTKDGRASK ADGKTYRFFE QLEALENNPS SHHSLLLPPP ITSSRPPPPP  180
LEATPINMAM PMPSGNANTI NLQLPASQQA TTTVTVSSAP PNNSSNIFVS SHQNTISHQN  240
IPLSSSMAPS SQPSPQPANN PINNLQANTN FPSHDQNISA MSYSTSSSTS SDEDIQRRHK  300
KKRKWKDFFE RLMKDVIDKQ EDLQRRFLET LEKRERDRMV REEAWRVQEV ARMNREHDLL  360
VQERSTAAAK DAAVISFLQK ITEQQNIQIP SNINVAPPSA QVQIQLPENP PPPSETRSQV  420
VHQQTQPTAV LVSPAPTQPS PATPAPISLP ATIPAQSLPL TPPVPAKSVE LTPKSDNGGE  480
GYSPASSSRW PKAEVEALIM LRTQLDVKYQ ENGPKGPLWE EISAGMKKLG YNRNAKRCKE  540
KWENINKYFK KVKESNKKRP EDSKTCPYFH QLDALYKEKA KNETSSSFSN PSASGFALNP  600
ENNPMMPIMA RPEQQWPRPP HHQQPQQHHE STRMDHDHES DNMDQDEDDE EEEDEDEENA  660
YEIVANKQQS SMAAANSTTT TTATTTV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	295	302	QRRHKKKR
2	295	303	QRRHKKKRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00244	DAP	Transfer from AT1G76890	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009618661.1	0.0	PREDICTED: trihelix transcription factor GTL1-like
TrEMBL	A0A1S3XDN4	0.0	A0A1S3XDN4_TOBAC; trihelix transcription factor GTL1-like
STRING	XP_009618661.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2402	24	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	3e-82	Trihelix family protein