PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01102g05008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 441aa    MW: 48474.5 Da    PI: 5.1752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01102g05008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13269315455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI++L+
  Niben101Scf01102g05008.1 269 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYINQLK 315
                               799***********************6.....4*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-5227204IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.856265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.72E-15268318No hitNo description
SuperFamilySSF474591.44E-17268327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-16269324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10269314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-17271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEQLMGSSSP MVDSSLPQGD NQLPLGLQHM LQYVIKSQPD WWAYAIFWQT SSDDEGKAFL  60
AWGDGYFQGA TGGAAVSSSI SSEASQSERK KVIRGIQALI DGDNNLIDDG DVTDTEWFYV  120
MSLARSFSVD NGSVAGKAFS SGNFVWITGA AQFQLYSCER ANEAQIHGIQ TLLCIPTPDG  180
VLELGSAHLI KENFDLVQQV KSLFLSSPPI QLLEKSICFA DIGLVSGLQQ DNEEKLENQQ  240
LDSDKKAVAK KKGRKPKGGD SNISMVALNH VEAERQRREK LNHRFYALRS VVPNVSRMDK  300
ASLLSDAVSY INQLKAKVDE LELQLIDHSS SNNKKQKINE SGENQSTNTS VDQELIPNSS  360
LEVEVKIVGP DAMIRVQSEN VNYPSAKLMS ALRHLQLQVH HASISSVNNL MLHDVVVKVP  420
QGLRTEDGLR TALLTTLESN S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-37272049192Transcription factor MYC3
4rqw_B8e-37272049192Transcription factor MYC3
4rs9_A8e-37272049192Transcription factor MYC3
4yz6_A8e-37272049192Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226091.10.0PREDICTED: transcription factor MYC4
TrEMBLA0A314KU410.0A0A314KU41_NICAT; Transcription factor bhlh14
STRINGXP_009623534.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.18e-77bHLH family protein