PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00981g04003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 1077aa    MW: 119163 Da    PI: 6.1372
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00981g04003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.75.7e-10132202166
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHH CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWk 66 
                               f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++ yr++++++ ++ G +
  Niben101Scf00981g04003.1 132 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySLQPPA-QELVARDLHDNVWTFRHVYRGRDEKHQFQLGIR 202
                               99*****************************9777766.49*********************9999988876 PP
2Auxin_resp119.52.6e-39229312183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               aahaa+++s+F+v+YnPra++seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sd+dpvrW+nS+Wr+L+
  Niben101Scf00981g04003.1 229 AAHAAANNSPFTVFYNPRAGPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDMDPVRWKNSQWRNLQ 312
                               79*******************************99879********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.94E-28123232IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-20123200IPR015300DNA-binding pseudobarrel domain
CDDcd100177.82E-10131200No hitNo description
PfamPF023621.2E-7132202IPR003340B3 DNA binding domain
SMARTSM010190.0024132229IPR003340B3 DNA binding domain
PfamPF065071.6E-34229312IPR010525Auxin response factor
PROSITE profilePS5174526.1029651049IPR000270PB1 domain
PfamPF023091.8E-59671050IPR033389AUX/IAA domain
SuperFamilySSF542773.92E-69821042No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1077 aa     Download sequence    Send to blast
MKTPVNVAGA GTQQASGNED EKKRINPELW QACAGPLVNL PVAGTHVVYF PQGHSEQVAA  60
SIKKDVEAQV PNYPNLPSKL ICLLHNVTLH ADPETDEVYA QMTLQPVPSF DKEALLRSDL  120
SMKANKPQPE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDYSLQPPAQ ELVARDLHDN  180
VWTFRHVYRG RDEKHQFQLG IRKANRQPTN LSSSVLSSDS MHIGILAAAA HAAANNSPFT  240
VFYNPRAGPS EFVIPLAKYY KATYSSQVSL GMRFRMMFET EESGTRRYMG TITGISDMDP  300
VRWKNSQWRN LQVGWDESTA GERINRVSIW EIEPITAPFL ICSSPFFSSK RPRQPGMPDG  360
DCSDMDGVFR RTMPWLGDDF GMTDPQGLPG LSLVQWMNMQ KNPSLTNPMM SNYLNSLSGS  420
VLQNLAGADL SRQLGLAAPQ LQQQHNLQFN TLRPNQQGQQ LEQLQKLPAA TLNSLDSIMQ  480
SQQQLYDISQ QPRQNSTNQS LPTSQVQAQL LQAQSLVQSQ NVLPSQQSIQ NQLQRNLPQR  540
LPQQQPQQQI LGQSQQQNFM SSQPPDTVNQ HHFSENQAQF QLLQKLHQQQ KSLLAQQSAL  600
QQSSHLGSIQ DQQKQFLDAS QNFSRSLATS QMLDASQTTS TSTSLSHSQV VQQQMTRTNS  660
QSNLRFVQPT QQPKLQQQQQ QSGILPDLSG PVGYSLPRTT YQLATNGSSL TRTAGGGQPV  720
MDEVPSWSTS VSTNNCQNVV QQNLNGRIHE STGARDETTH YSGPLLNSSG LEVMSANSNL  780
VKELQQKTDV KPSINVSKNQ NHGFLAPQTL NTAGHTLDYL DSSSSATSAC LSQNDVQLQQ  840
TTDPPLSSSS HPLIFRDSPD GEVQGDSRND IGFGANMENQ LGLPMMPDPL ITKSLMGSRK  900
DFSDNLSSGG GMLSSYENPK EAQPELLASM ASEYMTFNSI DSTINDGNFM DRGAWDPPPQ  960
LPRMRTFTKV YKRGAVGRSI DIGRYSGYEE LKLDLARRFG IEGQLEDRQR VGWKLVYVDH  1020
ENDVLLVGDD PWEEFVSCVC CIKILSPQEV QQMSLDGDFG GNVLQNQACS SSDAGGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1412133347388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768741.10.0PREDICTED: auxin response factor 19-like
TrEMBLA0A1U7VUV40.0A0A1U7VUV4_NICSY; Auxin response factor
STRINGXP_009768741.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19