PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00981g04002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 331aa    MW: 37807.9 Da    PI: 7.9758
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00981g04002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.7e-0988112126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt+ C  f++ GtC+ G+ C+FaHg
  Niben101Scf00981g04002.1  88 FKTRMCAKFLE-GTCRNGEHCTFAHG 112
                               69*********.*************9 PP
2zf-CCCH25.81.9e-08148170325
                               S---SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                               +++C+ f+ + +C+yGd+C+F H
  Niben101Scf00981g04002.1 148 MKICKKFYNGEECPYGDKCNFLH 170
                               579******66************ PP
3zf-CCCH36.11.1e-11223249127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               +kt  C+ +  tG+C++ drC+FaHg+
  Niben101Scf00981g04002.1 223 WKTTMCSKWETTGQCPFRDRCHFAHGQ 249
                               8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-1484120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-885118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.03787114IPR000571Zinc finger, CCCH-type
SMARTSM003560.001187113IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-688112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089145173IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027145172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-7145172IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-6148170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-8148171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-16218255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-10219253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788222250IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4222249IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6223249IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSYSDPPPPP PPFMPMPFAG GDIGEVWPQS PMNHEFPESY FQFDHAPPFK RLRNSDNNSP  60
NSANYTPMNS RVNQLNLTGN KGTSHIFFKT RMCAKFLEGT CRNGEHCTFA HGVEDLREPP  120
PNWQELVREK DRGVVGNWND DQKIIHRMKI CKKFYNGEEC PYGDKCNFLH ERPPKFKTDI  180
PRQRESSAIS IGITGNRSDP ELNEISKHGI AESDAVRIKP IYWKTTMCSK WETTGQCPFR  240
DRCHFAHGQS ELQAPSGPDL LMNPVPIMPR PFSVPLVELS STNAAVNASI QEEKEDKKIL  300
KWKLTKKIYR IYADWIDNLV PPHLLASKAE N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768675.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
RefseqXP_009768682.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
RefseqXP_016481777.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
RefseqXP_016481778.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
RefseqXP_016481779.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT814e-75C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A1S4AZ340.0A0A1S4AZ34_TOBAC; zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A1U7W3300.0A0A1U7W330_NICSY; zinc finger CCCH domain-containing protein 39
STRINGXP_009768675.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-68C3H family protein