PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00961g04008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 1014aa    MW: 113066 Da    PI: 5.1383
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00961g04008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-184993348
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               WT+eEde+l +av+q+ g++Wk+Ia ++   Rt+ qc +rwqk+l
  Niben101Scf00961g04008.1 49 QWTPEEDEILRQAVQQFKGKSWKRIADCFK-DRTDVQCLHRWQKVL 93
                              7****************************9.************986 PP
2Myb_DNA-binding58.21.9e-1899145148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g+WT+eEd++l++ v+++G+++W+tIa+++  gR +kqc++rw+++l
  Niben101Scf00961g04008.1  99 KGSWTKEEDDKLIQSVNRYGPKNWSTIAQELA-GRIGKQCRERWHNHL 145
                               799*****************************.*************97 PP
3Myb_DNA-binding45.81.4e-14151193145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               + +WT+eE++ l++a++ +G++ W+  a+ +  gR+++ +k++w+
  Niben101Scf00961g04008.1 151 KEPWTQEEELTLIRAHQVYGNK-WAELAKVLH-GRSDNAIKNHWH 193
                               679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4054293IPR017930Myb domain
SuperFamilySSF466893.01E-1542100IPR009057Homeodomain-like
SMARTSM007174.1E-144695IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2049105IPR009057Homeodomain-like
PfamPF002492.8E-154993IPR001005SANT/Myb domain
CDDcd001671.45E-135093No hitNo description
PROSITE profilePS5129430.01294149IPR017930Myb domain
SuperFamilySSF466891.72E-3096192IPR009057Homeodomain-like
SMARTSM007175.3E-1898147IPR001005SANT/Myb domain
CDDcd001675.37E-16101145No hitNo description
PfamPF139211.3E-18102160No hitNo description
Gene3DG3DSA:1.10.10.608.2E-26106152IPR009057Homeodomain-like
SMARTSM007173.1E-14150198IPR001005SANT/Myb domain
PROSITE profilePS5129419.233150200IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-21153200IPR009057Homeodomain-like
CDDcd001671.04E-10153193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1014 aa     Download sequence    Send to blast
MLDYPDLPLS QVTMESDKTS TMPSDDISSL QRVQPSHGRT SGPKRRSSQW TPEEDEILRQ  60
AVQQFKGKSW KRIADCFKDR TDVQCLHRWQ KVLDPELVKG SWTKEEDDKL IQSVNRYGPK  120
NWSTIAQELA GRIGKQCRER WHNHLNPAIN KEPWTQEEEL TLIRAHQVYG NKWAELAKVL  180
HGRSDNAIKN HWHSSVKKKL DSYLASGLLA QFPAPPNVNH QNQSVPSSSM TLQQNSEDES  240
IHKEGTEAEN SSVKKKLDSY LASGLLGEFP ALPNVNYQNQ SVPSSSMTLQ QNSEDESIHK  300
EGTEAEEVPE CSQGSNFAGC SQSTSDLGNT FVHIRENSGM SEESICKKDA TSSTARCCRN  360
YSPVFQDVSC SMLKVPSELV DSKFLEHNLA HDWGNSMEED WQFNRDDMPN ISPLEFIHES  420
SGISMHCLNG NDNHDMVATA NVGNVVEGPD KPNEMFVSVD GSMMVYPEEG IPQCSPSETG  480
VNGCGQPIYS LCYQSSNYQI PEVGDMVPQN CNALSFDDFE ASFHQPFSVP SQFSSEDKSH  540
VFDIVLNHFH NPPLEGPDHM KDSSRIVSVN DLGSTTSNTV QTCLLNENLF VKGEQKDGGA  600
LCYDPPRFPS SDVPFFCCDL IQSGSDTQEE YSPFGIRQLM MTSANCLTPL RLWDSPSRDS  660
PDAILKSAAK TFTGTPSILK KRHRHLLSPL SEKRCEKKLE SNLNQESFSN MTTNFSRLDD  720
MFDESANEKA SMEDKENLHP SSEDGRKEEG ECSGANDATG KVKQPPGVLV ELSTNDLFLS  780
PDRFLIKCDR TRSLRNKALG KQYARRLEAA SNQVTVSSSF ETSFLSVVCF PGIRGKRRSR  840
AVIATSAALG NKAEDSETRF GAETLSISGE TPYKRSFESP SAWKSPWFMN SFQPSTRYDT  900
ELEFEDLALF MSPGDRSYDA IGLMKQLSEQ TAPSIADAHQ IFGSETPETN LSKRNSGKKK  960
ADENCTLLDS NATSERPTLD FNERGTPGKG KEITKFGSNN SFSSPSSYLL KYCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-63482007159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-63482007159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226595.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_019226596.10.0PREDICTED: myb-related protein 3R-1-like
TrEMBLA0A314KS710.0A0A314KS71_NICAT; Myb-related protein 3r-1
STRINGXP_009627768.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.23e-99myb domain protein 3r-4