PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00961g01024.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 281aa    MW: 29936.9 Da    PI: 5.3558
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00961g01024.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.3e-09130174554
                               HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                               h+++Er RR+ri +++  L+el+P+ +      K + a +L + v+Y+k L
  Niben101Scf00961g01024.1 130 HSIAERLRRERIAERIRALQELVPNvN------KTDRAIMLDEIVDYVKFL 174
                               99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-15123185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.139125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14127184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6130174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MANNPSEGPD DFFDQILGFP AYNGAETNLA GSDAGAIPPA MLLQLNSGDA SGQFSGMGLG  60
VGLGGGGGFH HPSQSGSFPL GLSLEGGKSG FMKMDDVPAG FHGQPMPSMP HPPAIRPRVR  120
ARRGQATDPH SIAERLRRER IAERIRALQE LVPNVNKTDR AIMLDEIVDY VKFLRLQVKV  180
LSMSRLGGAA AVAPLVTEIP ISSVEEEISE GGNNQPAWEK WSSDGTERQV AKLMEENVGS  240
AMQFLQSKAL CIMPISLASA IYHSQPPDTS SLIKPETNPP S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019247958.11e-168PREDICTED: transcription factor UNE12
SwissprotO227681e-103UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1J6JEP41e-166A0A1J6JEP4_NICAT; Transcription factor une12
STRINGXP_009776898.11e-162(Nicotiana sylvestris)
STRINGXP_009607290.11e-162(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.23e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]