PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00883g13017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 433aa    MW: 48681.7 Da    PI: 9.1531
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00883g13017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.00023114140127
                               CHHHHHHHHHHHHHHHHHHHHHHHCTS CS
                       HLH   1 rrrahnerErrRRdriNsafeeLrell 27 
                               r++ +  rE+ RRdr+N+ f eL   l
  Niben101Scf00883g13017.1 114 RKVQKADREKFRRDRLNEQFTELGNTL 140
                               5677889***************97765 PP
2HLH284e-09151200154
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               r++ +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL  +++ +k+L
  Niben101Scf00883g13017.1 151 RKVQKADREKFRRDRLNEQFTELGNTLDPD----RPKNDKASILSDTIQVLKDL 200
                               5677889********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.3E-11150219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.982150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-12150215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-7151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-5151204No hitNo description
SMARTSM003534.2E-6156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MVESCIESAL RKRKKKYCVC LTRVTPNICW KHNYSVTVSI LRHRFQSSEG LRKTLRCIIP  60
ISQSQLRMDE LKCQTSYQSN HVPNPSVSDS TQLPPDSSTK QRPEGELKDS IAARKVQKAD  120
REKFRRDRLN EQFTELGNTL EGELKDSIAA RKVQKADREK FRRDRLNEQF TELGNTLDPD  180
RPKNDKASIL SDTIQVLKDL TAQIGKLKSE YAALTDESRE QLTQEKTDLR EEKASLKSDI  240
ESLNAQYQQR LRTMYPWAGM DPSMVMHPPS YSYPVPVPIP TGAIPMHPSL QPYPFFGNQN  300
PVAVPNPCSP FVQYMAPSTL MEQQSAQQIS PVMQPSSRTH GSGRHDSRNN SSDQGESRIE  360
KNEDSNEVAT NLELKTPGPA SEQVLSSGQR ISRKISSKDN SLTDGSSLSR CSSSHSVQAL  420
SSNSVVRGKK IDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11014RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783164.10.0PREDICTED: transcription factor bHLH121-like
RefseqXP_016504316.10.0PREDICTED: transcription factor bHLH121-like
SwissprotQ9LT233e-81BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A314L3030.0A0A314L303_NICAT; Transcription factor bhlh121 (Fragment)
STRINGXP_009783164.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54562434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.17e-85bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]