PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00863g07022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 236aa MW: 25725.8 Da PI: 8.0355 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.7 | 3.5e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+++tG Ck+G+ C+F+H++ Niben101Scf00863g07022.1 98 QPECQFYMKTGDCKFGAVCRFHHPR 122 799********************96 PP | |||||||
2 | zf-CCCH | 38.4 | 2.1e-12 | 142 | 168 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF H++ Niben101Scf00863g07022.1 142 PGEPMCIFYSRYGICKFGPSCKFDHPM 168 57899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.751 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.4E-5 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-9 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-6 | 99 | 125 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 101 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.925 | 141 | 169 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-9 | 144 | 168 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-6 | 144 | 168 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-4 | 146 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGNESPLSSK QVGFFTNSTN VFVFFIAISS SKGQFGSVSS AEGQQQTAGN SQVYRSSRSS 60 DKATMGSEGM NSSYRASSLP VGYYALQGEN VFPEQVGQPE CQFYMKTGDC KFGAVCRFHH 120 PRERLLPPPD CLLSPIGLPL RPGEPMCIFY SRYGICKFGP SCKFDHPMRV FTYNISASSS 180 TDDPSVWRLL GSSSGTDVLT LTSEGIVEAA STTPRRLSLS ETRKKPPGDN NFDREG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009626545.1 | 1e-138 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X6 | ||||
Refseq | XP_009769503.1 | 1e-137 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Refseq | XP_009769505.1 | 1e-138 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4 | ||||
Refseq | XP_016437924.1 | 1e-138 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X3 | ||||
Refseq | XP_018633486.1 | 1e-138 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X5 | ||||
Swissprot | Q9SWF9 | 1e-91 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A1S3XDL2 | 1e-137 | A0A1S3XDL2_TOBAC; zinc finger CCCH domain-containing protein ZFN-like isoform X3 | ||||
TrEMBL | A0A1U7VT24 | 1e-136 | A0A1U7VT24_NICSY; zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
TrEMBL | A0A1U7W5G8 | 1e-136 | A0A1U7W5G8_NICSY; zinc finger CCCH domain-containing protein ZFN-like isoform X4 | ||||
STRING | XP_009769498.1 | 1e-136 | (Nicotiana sylvestris) | ||||
STRING | XP_009626542.1 | 1e-136 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5289 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 2e-62 | zinc finger protein 1 |