PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00830g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 232aa    MW: 26644.8 Da    PI: 9.9312
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00830g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1875129256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               rk+ ++tkeq + Lee F+++ ++   +++eLA+kl+L+ rqV vWFqNrRa+ k
  Niben101Scf00830g03001.1  75 RKKLRLTKEQSTLLEESFKRHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTK 129
                               678899***********************************************98 PP
2HD-ZIP_I/II115.72.8e-3775163189
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kk+rl+keq++lLEesF+++++L   +K+ela +L+l+prqv+vWFqnrRARtk+kq+E+d+++Lk+++++l++en+rL+ke +
  Niben101Scf00830g03001.1  75 RKKLRLTKEQSTLLEESFKRHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTKLKQTEVDCAFLKKCCQSLNDENSRLKKELQ 159
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLre 89 
                               eL++
  Niben101Scf00830g03001.1 160 ELKS 163
                               **93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-1860132IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-1770134IPR009057Homeodomain-like
PROSITE profilePS5007117.0771131IPR001356Homeobox domain
SMARTSM003893.0E-1573135IPR001356Homeobox domain
PfamPF000465.9E-1675129IPR001356Homeobox domain
CDDcd000862.45E-1375132No hitNo description
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
SMARTSM003401.2E-16131174IPR003106Leucine zipper, homeobox-associated
PfamPF021832.4E-9131164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGNDNEICDT RLTLGLVTSD LLPKQEEHKK IICLDLSIPL HSSDMEKKKT EGSNSKVSPR  60
NYNNINIEIK KNGMRKKLRL TKEQSTLLEE SFKRHTTLAM GQKQELAAKL KLKPRQVEVW  120
FQNRRARTKL KQTEVDCAFL KKCCQSLNDE NSRLKKELQE LKSIKIDQWV SPFHPQLPKI  180
RTIALCPSCQ KTDNIKSEQK HCDLDCGNRK VASDATSKEA NSDTIIVKEN NK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767818.11e-147PREDICTED: homeobox-leucine zipper protein HAT9-like
SwissprotP466043e-46HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A1U7VN601e-145A0A1U7VN60_NICSY; homeobox-leucine zipper protein HAT9-like
STRINGXP_009767818.11e-146(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-44HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]