PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00797g09001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 317aa    MW: 36028.8 Da    PI: 9.5753
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00797g09001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.52.3e-20126212178
                  trihelix   1 rWtkqevlaLiearremeerlr.rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
                               +Wt++ v++Li+++  ++++ + +g           +kk++W+ vs+ m++ g+++sp+qC++k+++lnkrykk++++ ++  + 
  Niben101Scf00797g09001.1 126 KWTDNVVRLLIQVVACVGDDGSlEGTeglkrksgclQKKGKWKTVSRIMMSNGCHVSPQQCEDKFNDLNKRYKKLNDILRRD-PM 209
                               7**************777777632223455566778*******************************************985.33 PP

                  trihelix  75 ssst 78 
                               +s +
  Niben101Scf00797g09001.1 210 KS-K 212
                               33.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-18124214No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MNSSGMGGGF LSGYNGGFLG MNRLQQSQSN SNNPAHGHQS NHNNVQSSMI MKLGLENDKQ  60
IGLVDVKSCM PFGKDKAVGP SNVVNSSNNH NNNTSDEDEP SFTEDGIGDN NGGALGKKGS  120
PWQRMKWTDN VVRLLIQVVA CVGDDGSLEG TEGLKRKSGC LQKKGKWKTV SRIMMSNGCH  180
VSPQQCEDKF NDLNKRYKKL NDILRRDPMK SKWEQKMWIK KRMLQLEEEK IGIQAEALEL  240
EKRQFKWQRF CRKKDRELEI ERLENEKLIL ENEHMSLQLK HKELEIDSKK PNISFNSAPL  300
SIDRPRGRDQ IDAARYH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016468514.11e-128PREDICTED: uncharacterized protein LOC107791041
TrEMBLA0A1S3ZW131e-127A0A1S3ZW13_TOBAC; uncharacterized protein LOC107791041
STRINGXP_009768464.11e-127(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129131720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-37sequence-specific DNA binding transcription factors