PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00735g03006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 657aa    MW: 72150.1 Da    PI: 7.4432
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00735g03006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.4e-07244264526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C+ f++ G C++Gd C +aHg
  Niben101Scf00735g03006.1 244 PCPEFRK-GACQRGDMCEYAHG 264
                               8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.1E-1611159IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.77E-1615148IPR020683Ankyrin repeat-containing domain
PfamPF127964.8E-1053126IPR020683Ankyrin repeat-containing domain
CDDcd002042.12E-1357135No hitNo description
SMARTSM002480.025787IPR002110Ankyrin repeat
PROSITE profilePS5029715.08857160IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0192124IPR002110Ankyrin repeat
PROSITE profilePS5008810.60692127IPR002110Ankyrin repeat
SMARTSM003562.0E-5239265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.568244266IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-5244264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4272302IPR000571Zinc finger, CCCH-type
SMARTSM0035641274297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MNNLTVETVD TFASLLELAA NNDIEAFKRR IERDLSSIHE VGQWYGRQKG SKQMVLEHRT  60
ALMIAATYGS IDVVKLILSV PDVDVNRSCG HDKSTALHCA ASGGSPNAAE AVKLLLGAGA  120
DPKSKDVNGR CPIDVIVVSP NFLSVKSRLE NLLKTDDSNS SPKSAKSNDT PVYSMPEKKE  180
YPIDPSLPDI KNYIYSTDEF RMFSFKIRPC SRAYSHDWTE CPFVHPGENA RRRDPRKYHY  240
SCVPCPEFRK GACQRGDMCE YAHGVFECWL HPAQYRTRLC KDGTDCNRRV CFFAHTQEEL  300
RPLYVSTGSA VPSPRGSTAA NAMDFAAGMG LIPGSPSSVS VMSPSPFSPP MSPSANGISS  360
MGWLQQNVPA LHLPGSFLHS SRLRSSLNAR DIPAADLNAY PDFDVQRQLL NEFSCLSQRN  420
MSSNSFNCSP RQMSHARANL EELFSAESSS PRYSDQALAQ AGFSPTHKSA VCSQLQQQQS  480
LLSPINTNFS PRNVDNPLLQ ASFGVPSSGR MSPRAVEPIS PRSPRVSILA QRDKQHQFRS  540
FSSRDLGSNV SAIVGLPADT WGTAMGKPDW AVNTGEFGRL RRSSSFELAN NGEEPDISWV  600
QSLVKESPPE MMKDKCVPRV CGPTGAVADL GESSTSSSQI DQSDQLSAWM EQMKLDQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804762.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_016472211.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1S4A6L80.0A0A1S4A6L8_TOBAC; zinc finger CCCH domain-containing protein 30-like
TrEMBLA0A1U7YL130.0A0A1U7YL13_NICSY; zinc finger CCCH domain-containing protein 30-like
STRINGXP_009804762.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]