PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00704g03002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 901aa    MW: 101568 Da    PI: 8.5738
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00704g03002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.6e-06200220526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                Cr+f + G C++G+ C+F H+
  Niben101Scf00704g03002.1 200 VCRNFTA-GNCRRGSDCRFFHP 220
                               6******.***********998 PP
2zf-CCCH19.41.9e-06272295226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               +t +Cr+f + G C+ G++C+F+H+
  Niben101Scf00704g03002.1 272 GTIICRDFVK-GNCRWGASCRFSHD 295
                               5779******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.15195222IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-5197221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5198219IPR000571Zinc finger, CCCH-type
PfamPF146080.33201220No hitNo description
Gene3DG3DSA:4.10.1000.103.6E-6266295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713270297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-5270295IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-5270296IPR000571Zinc finger, CCCH-type
PfamPF146080.55275294No hitNo description
PROSITE profilePS5010312.098321347IPR000571Zinc finger, CCCH-type
SMARTSM003560.6321346IPR000571Zinc finger, CCCH-type
PfamPF146080.014327344No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
MGESAKRRKS LWDAEETPNS PDYEEWGASK ADNSWQSKNN SGWSSGDNVT GTEELRKENY  60
HYKSMSPAFD RWGRRSNSHS PNNGRTQSRR YSERARSRSR SRSRSPAKGE GRSRSRSRGR  120
DRFRGWTRSR SRSKSRDRDR DKDRGRDRDR DRDRDRDRDR DRDRGSMRVQ NRSRSPLHNS  180
KRDPYASGDR RSGPRMSSQV CRNFTAGNCR RGSDCRFFHP DAINHRDGGH SEGNLVERLG  240
SRPERGHVSR YADSEGHMHH LEGEMHRNRN RGTIICRDFV KGNCRWGASC RFSHDGASGD  300
SYDKDTRSSS FDHGQDNQVS RTGKSLCKYF AAGKCYKDNC KFSHDATSRN HEIKPSDDIG  360
GHRLDDKNNW LKGPKWDDER PSDLVKASGW DEGRPSDHVK ASGWEEGRPS DHVKSSGWDE  420
SGVRKDTAVT VLTDRTNERL DHNFENESRA WGSTETHYMN SDGERGVSPH GGNAGNLNAL  480
NISESSVMQK LTNAQAIHLT SQASDQNLER TSAHVLGHNS NPEASGIILS ATATQPYGSA  540
SSCIQPQGLT EDSIARTLGS NALNEFMHAR DGLHQVHLPG QSFSGTGIGM ISEHSAALNG  600
THQAPNVFLP IPSTGQNKRE APSTPEMLEF KVPQNISCTV TGEQVHQMKT SPTSMIKKFE  660
EELREAQLQR VLNPSDPSGM LASHSISSLV NAIYGQTNLE MRGPNNYHPA DGVENFKMPP  720
DNSYLDRESN KVPEEQMNQS STADPEPGNN DQIDDVKQQE NKLVEVDGKD KLAPEDSKDG  780
QENDHPGDMN MHGKVEEGSG NKDEKTMRLF KNALIEFVKE ILKPTWKEGK MSREVHKTVV  840
KKVVDKVTST TQGEHVPKTQ EKIEQYLSYS KAKITKLVQQ EEQYEKDTQI RNHVIYETRI  900
Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119RSRSRSRGR
2153163RDRDRDRDRDR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233748.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like isoform X1
TrEMBLA0A1J6L7U30.0A0A1J6L7U3_NICAT; Zinc finger ccch domain-containing protein 55
STRINGXP_009629285.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-10C3H family protein