PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00691g03015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 362aa    MW: 37428.4 Da    PI: 6.9129
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00691g03015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.5e-11196241555
                               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               h+++Er RR+ri +++  L+ l+P+a      K +Ka++L + ++Y++ Lq
  Niben101Scf00691g03015.1 196 HSIAERLRRERIAERMKSLQVLVPNA-----NKTDKASMLDEIIDYVRFLQ 241
                               99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.00E-12189245No hitNo description
SuperFamilySSF474597.33E-15189245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.634191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-14193245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-8196241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MQAMNSQMSL QEENGASSSQ NMSHSHFDPT SSHDDFLQQI LSSVPSSSSW PDLSGGGDGH  60
FDDQSIFLAS KLRQNQITGG GGAAAAAKAL MLQQQLLLSR GLLAGNGDQN DDVANQGNEI  120
SVQALYNGFA GSLGQTTNQP QHFHHAQEGS MQAQSFGALA LSTMNQTPAA SGGSAGGGQP  180
KQQKVRARRG QATDPHSIAE RLRRERIAER MKSLQVLVPN ANKTDKASML DEIIDYVRFL  240
QLQVKGGGGD SAQANGCGRG SKGTTSLANN DSMTMTEHQV AKLMEEDMGS AMQYLQGKGL  300
CLMPISLATA ISTATCHSMK PKNPLLHGGG GGSAANGGGG GPSSPSLSAS TVQSATMGNG  360
GA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200205RLRRER
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245333.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG93e-78BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A1J6IF690.0A0A1J6IF69_NICAT; Transcription factor bhlh66
STRINGXP_009619149.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37592445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.15e-58LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]