PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00646g07008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 714aa MW: 80489.2 Da PI: 5.9084

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00646g07008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.1	8.3e-22	504	592	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyf 82 +Wt+++v++Li+++++++ ++ ++ kk++W+++s +m+erg ++sp+qC++k+++lnk++k++++ +++t + ++++ +++ Niben101Scf00646g07008.1 504 KWTDEMVKLLITGVSYIGGDVLSNGlfIKKGKWRAISCVMAERGHHVSPQQCEDKFNDLNKKFKRLNDVLGRGTaCHVVENPALL 588 7*****************998764579******************************************548888888888 PP trihelix 83 dqle 86 + ++ Niben101Scf00646g07008.1 589 EMMD 592 8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00022	6.5E-142	5	371	IPR004000	Actin family
Gene3D	G3DSA:3.30.420.40	2.9E-76	5	188	No hit	No description
SuperFamily	SSF53067	2.54E-65	6	155	No hit	No description
SMART	SM00268	1.8E-225	7	377	IPR004000	Actin family
CDD	cd00012	1.40E-19	10	183	No hit	No description
PRINTS	PR00190	3.1E-55	28	37	IPR004000	Actin family
PRINTS	PR00190	3.1E-55	51	62	IPR004000	Actin family
PROSITE pattern	PS00406	0	55	65	IPR004001	Actin, conserved site
PRINTS	PR00190	3.1E-55	63	85	IPR004000	Actin family
PROSITE pattern	PS01132	0	106	118	IPR020902	Actin/actin-like conserved site
PRINTS	PR00190	3.1E-55	117	130	IPR004000	Actin family
PRINTS	PR00190	3.1E-55	142	161	IPR004000	Actin family
SuperFamily	SSF53067	3.46E-92	149	367	No hit	No description
Gene3D	G3DSA:3.90.640.10	3.0E-40	189	258	No hit	No description
PRINTS	PR00190	3.1E-55	238	254	IPR004000	Actin family
Gene3D	G3DSA:3.30.420.40	2.8E-36	259	367	No hit	No description
PROSITE pattern	PS00432	0	358	366	IPR004001	Actin, conserved site
PROSITE profile	PS50090	6.133	497	563	IPR017877	Myb-like domain
Pfam	PF13837	7.0E-18	502	616	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MADSEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA 60 QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP DEHPVLLTEA PLNPKANREK 120 MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL 180 DLAGRDLTDC LMKILTERGY SFTTSAEREI VRDVKEKLAY VALDYEQELE TAKSSSSVEK 240 SYELPDGQVI TIGSERFRCP EVLFQPSLVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV 300 LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIT 360 KGEYDESESI VILRVLLPLC GMGRTARHGS RYDGREDGET SKVSVARTSN PHDLETWWAG 420 MSMQVNRQLT DHPNQGPVVL GQHAPEVMSF GVNNMEDIDQ EMQLLDSIKF NSVEMPEVYH 480 KGMNDVTEVC GHAEEKRPVY HRMKWTDEMV KLLITGVSYI GGDVLSNGLF IKKGKWRAIS 540 CVMAERGHHV SPQQCEDKFN DLNKKFKRLN DVLGRGTACH VVENPALLEM MDLSDDLKEE 600 IKKLLGSKQL FYQELCSYNN QNRLFLPHDQ DVQKSVLLAV KDEHAPPRLL QLEEQKLQIQ 660 AQILELEKKR FKHMRFCSKE DKELQKIMLD NEVIKLENQR LVLELKRSGM RPFD

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MADSEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA  60
QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP DEHPVLLTEA PLNPKANREK  120
MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL  180
DLAGRDLTDC LMKILTERGY SFTTSAEREI VRDVKEKLAY VALDYEQELE TAKSSSSVEK  240
SYELPDGQVI TIGSERFRCP EVLFQPSLVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV  300
LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIT  360
KGEYDESESI VILRVLLPLC GMGRTARHGS RYDGREDGET SKVSVARTSN PHDLETWWAG  420
MSMQVNRQLT DHPNQGPVVL GQHAPEVMSF GVNNMEDIDQ EMQLLDSIKF NSVEMPEVYH  480
KGMNDVTEVC GHAEEKRPVY HRMKWTDEMV KLLITGVSYI GGDVLSNGLF IKKGKWRAIS  540
CVMAERGHHV SPQQCEDKFN DLNKKFKRLN DVLGRGTACH VVENPALLEM MDLSDDLKEE  600
IKKLLGSKQL FYQELCSYNN QNRLFLPHDQ DVQKSVLLAV KDEHAPPRLL QLEEQKLQIQ  660
AQILELEKKR FKHMRFCSKE DKELQKIMLD NEVIKLENQR LVLELKRSGM RPFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1nlv_A	0.0	3	374	1	372	Actin
1nm1_A	0.0	3	374	1	372	Actin
1nmd_A	0.0	3	374	1	372	Actin
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009759480.1	0.0	PREDICTED: actin-101
Refseq	XP_016479231.1	0.0	PREDICTED: actin-101-like
Refseq	XP_019267646.1	0.0	PREDICTED: actin-101
Refseq	XP_019267647.1	0.0	PREDICTED: actin-101
Swissprot	P30173	0.0	ACT13_SOLTU; Actin-101
TrEMBL	A0A1S4ARM1	0.0	A0A1S4ARM1_TOBAC; actin-101-like
TrEMBL	A0A1U7VCD4	0.0	A0A1U7VCD4_NICSY; actin-101
TrEMBL	A0A314KXV4	0.0	A0A314KXV4_NICAT; Actin-101
STRING	XP_009759480.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12585	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	4e-55

Publications ? help Back to Top
Drouin G,Dover GA Independent gene evolution in the potato actin gene family demonstrated by phylogenetic procedures for resolving gene conversions and the phylogeny of angiosperm actin genes. J. Mol. Evol., 1990. 31(2): p. 132-50 [PMID:2120451]