PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00626g02003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 876aa    MW: 97028.8 Da    PI: 5.1188
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00626g02003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.2e-0868883656
                              HCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox 36 klgLterqVkvWFqNrRakek 56
                               l+L+++qVk+WFqNrR+++k
  Niben101Scf00626g02003.1 68 ILELETKQVKFWFQNRRTQMK 88
                              469***************999 PP
2START161.37.1e-512384602205
                               HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
                     START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla 77 
                               la++a++el+ +a+ +ep+Wv+s     e +n +e+ ++f++  +     + +ea ra+g v+ ++ +lve+l+d + +W e++ 
  Niben101Scf00626g02003.1 238 LALAAMNELLGLAEIGEPLWVRSLdgggETLNLEEYARSFTPCTGmkpghFATEATRATGTVIVNSLTLVETLMDMS-RWVEMFS 321
                               6899************************************99888999999**************************.******* PP

                               ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEE CS
                     START  78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSg 151
                                   k + ++vi         ++lql++ae+q +s lvp R+  f+R+++q+ +g+w++vdvSvd  ++ ++  ++  +++lpSg
  Niben101Scf00626g02003.1 322 civgKTSFVNVIPGStcgswsSDLQLIQAEFQIISDLVPaREMKFLRFSKQQAEGVWAVVDVSVDTVKESSQPREIGICRRLPSG 406
                               ************999999*************************************************999987889999****** PP

                               EEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                     START 152 iliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                               +++++++ng+skvtw+eh+++ ++++h l+r+lv++gl +ga++w+atlqrq e
  Niben101Scf00626g02003.1 407 CIVQDMPNGYSKVTWIEHMEYYENVVHHLYRPLVRNGLGFGAQRWMATLQRQSE 460
                               ***************************************************976 PP
3START120.42.4e-3847360673205
                               -TT-SEEEEEEEECTTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEE CS
                     START  73 detlakaetlevissggalqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliep 156
                               d++ ++ +t+++ s  ++lql++ae+q +s lvp R+  f+R+++q+ +g+w++vdvSvd  ++ ++  ++  +++lpSg+++++
  Niben101Scf00626g02003.1 473 DKYGNAGSTHDTXSWSSDLQLIQAEFQIISDLVPaREMKFLRFSKQQAEGVWAVVDVSVDTVKESSQPREIGICRRLPSGCIVQD 557
                               6677788999999999**********************************************999987889999*********** PP

                               ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                     START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                               ++ng+skvtw+eh+++ ++++h l+r+lv++gl +ga++w+atlqrq e
  Niben101Scf00626g02003.1 558 MPNGYSKVTWIEHMEYYENVVHHLYRPLVRNGLGFGAQRWMATLQRQSE 606
                               **********************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-64590IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-66197IPR009057Homeodomain-like
PROSITE profilePS500719.8476590IPR001356Homeobox domain
CDDcd000866.93E-46790No hitNo description
PfamPF000462.6E-56888IPR001356Homeobox domain
PROSITE profilePS5084837.86228464IPR002913START domain
SuperFamilySSF559611.51E-27229460No hitNo description
CDDcd088755.21E-101232460No hitNo description
SMARTSM002344.2E-38237461IPR002913START domain
PfamPF018525.9E-43238460IPR002913START domain
SMARTSM002340.073464607IPR002913START domain
PfamPF018522.2E-32474605IPR002913START domain
SuperFamilySSF559614.18E-16488604No hitNo description
PROSITE profilePS5084821.761504610IPR002913START domain
SuperFamilySSF559617.83E-11637870No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MESHSDMSEK GEGSNNVVIG RPKEEDESES RSNGDNFLNG VASEDETDSV LSNSSRKRKY  60
SRHTANQILE LETKQVKFWF QNRRTQMKTQ LERHENGMLK QENDRLRIEH IAMQEAMKHP  120
ICNRCRSQAI IADINVEEHQ TKIEHERLKE EVKRISVLAD KLLGPLSSLE GSMASVIANP  180
AFGLPEGING FGGINYASAA SSMGLDFDNG LSSPPPVIIS PSLANVDVSY DKSMLMDLAL  240
AAMNELLGLA EIGEPLWVRS LDGGGETLNL EEYARSFTPC TGMKPGHFAT EATRATGTVI  300
VNSLTLVETL MDMSRWVEMF SCIVGKTSFV NVIPGSTCGS WSSDLQLIQA EFQIISDLVP  360
AREMKFLRFS KQQAEGVWAV VDVSVDTVKE SSQPREIGIC RRLPSGCIVQ DMPNGYSKVT  420
WIEHMEYYEN VVHHLYRPLV RNGLGFGAQR WMATLQRQSE FVAMLMSSVD TPDKYGNAGS  480
THDTXSWSSD LQLIQAEFQI ISDLVPAREM KFLRFSKQQA EGVWAVVDVS VDTVKESSQP  540
REIGICRRLP SGCIVQDMPN GYSKVTWIEH MEYYENVVHH LYRPLVRNGL GFGAQRWMAT  600
LQRQSEFVAM LMSSVDTPAP CVAVLFSSGQ TSMAMLAQRM TRNFCAGVCA TIHKWESIQQ  660
ANGEDAKLMM RKNIGDPGEP IGVVLSATKT IWLPVKQQHL LDFLLNEQTR SQWDILFNSG  720
PMQQMVHISK GQNIDNSISL FRANGDAISD SENNMLILQD TSTDATGSLI VYATIDVADM  780
DVVMNGGDSS SVSFLPSGIA IVPDCFQDYP GTNNCDIGTS WEKDNGFNGT GSLVTIGFQV  840
LVNSLPAEKL SMESVQKVNN LISHTIHGIK AAFKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248454.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
SwissprotQ0WV121e-137ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A1J6IMV40.0A0A1J6IMV4_NICAT; Homeobox-leucine zipper protein anthocyaninless 2
STRINGXP_009771833.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1531837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.21e-129HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]