PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00592g03010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 242aa    MW: 26655 Da    PI: 7.9752
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00592g03010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.2e-20135169135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Niben101Scf00592g03010.1 135 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 169
                               ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.89129165IPR000679Zinc finger, GATA-type
SMARTSM004015.7E-19129181IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-13132170No hitNo description
Gene3DG3DSA:3.30.50.103.3E-17133169IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.39E-12134166No hitNo description
PfamPF003205.4E-18135169IPR000679Zinc finger, GATA-type
PROSITE patternPS003440135160IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MNSCSSTYCH GGHCTCGMFY NQNNSSTASA YSMLYNQNQT TPFEENYSDQ NTYSFASSTS  60
SNSVDCTLSL GTPSTRLSTS NDNNEKRLQS NERCSNSYMS KCWNILQPKN HKSSRGSSNG  120
NTNSGGADPL VARRCANCDT TSTPLWRNGP RGPKSLCNAC GIRFKKEERR ASAAAATVNG  180
GGMDHTQHMI NGGSWVHHSQ AQKMPCYSSA AYGNHEFRFI EDDDRDSDNS IPFWPFMASQ  240
RC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508845.11e-164PREDICTED: GATA transcription factor 18-like
TrEMBLA0A1S4D5Y81e-163A0A1S4D5Y8_TOBAC; GATA transcription factor 18-like
STRINGXP_009629630.11e-156(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38182346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.15e-42GATA family protein