PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00581g01013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 301aa    MW: 33969.6 Da    PI: 5.7666
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00581g01013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-3078136259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+
  Niben101Scf00581g01013.1  78 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPNMLVVTYSCEHNHP 136
                               69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-3174138IPR003657WRKY domain
SuperFamilySSF1182902.22E-2676138IPR003657WRKY domain
SMARTSM007744.2E-3677137IPR003657WRKY domain
PROSITE profilePS5081132.40978138IPR003657WRKY domain
PfamPF031063.8E-2679136IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDGRFNNIFL SHEQEDSENS PENSLDSPRS DMFNDNKMMT STSSPKRSRR SIQKRVVSVP  60
IKEVEGSKMK GEISMPPSDS WAWRKYGQKP IKGSPYPRGY YRCSSSKGCP ARKQVERSRA  120
DPNMLVVTYS CEHNHPWPAS RNNQHTQRTT TTTSCTNNAK TKTKTLASLT ATTTITATNI  180
AVSDFEREKD TSNFASQSEK NSDEKFTDLG ESSLISCNEF GWFSDFECTS TTMLESPILS  240
EVEVTDIDMS LTTMREEDDS LFADLGELPE CSRVFGRGMM ERDEERRRHS LSLTSWCGTT  300
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-2267138379Disease resistance protein RRS1
5w3x_D3e-2267138379Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016478674.10.0PREDICTED: probable WRKY transcription factor 65 isoform X1
TrEMBLA0A1S4APQ80.0A0A1S4APQ8_TOBAC; probable WRKY transcription factor 65 isoform X1
STRINGXP_009758490.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64752333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.14e-68WRKY DNA-binding protein 65