PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00573g04004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 705aa    MW: 76553 Da    PI: 6.5582
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00573g04004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.6e-09276296526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C++f++ GtC++Gd C +aHg
  Niben101Scf00573g04004.1 276 PCPDFRK-GTCQRGDACEYAHG 296
                               8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.6E-1658165IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.7E-1765158IPR020683Ankyrin repeat-containing domain
PfamPF127961.5E-968144IPR020683Ankyrin repeat-containing domain
CDDcd002043.64E-1569172No hitNo description
PROSITE profilePS5029715.59275158IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02975105IPR002110Ankyrin repeat
SMARTSM002484.4E-4110142IPR002110Ankyrin repeat
PROSITE profilePS5008811.915110145IPR002110Ankyrin repeat
SMARTSM003561.6E-5271297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4275298IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6276296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873276298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4304334IPR000571Zinc finger, CCCH-type
SMARTSM0035663306329IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.005306330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MCSGSKSKVC SADLAMETEI QKQKDLVPAF SLLLELSASD DIMNFQKAVE EEGHDMKEVG  60
LWYGRRIGVN NMGYEERTPL MIAATFGSKR VLTYMLEKGC LDVNQACGSD GATALHCAIA  120
GDSAALLEVV KLLLDASADV NLVDAKGKRA VDLISAQGCC LNSRRKILEH LLGGSSDDGE  180
ASGLIDQIIS EQAEEQLLLT PNISKFGSEK KEYPVDPSLP DIKIGIYGTD DFRMYIFKVK  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPDF RKGTCQRGDA CEYAHGIFEC  300
WLHPAQYRTR MCKDETNCNR RVCFFAHKPE ELRPLYPSTG SALLSPRSYS NSPLSLDIAS  360
ISPLALGSPS IMLPPTSTPP MSPSAGASSV GGSLWPCQSS LATPTLQLPI SRLKTTYSAR  420
DVELDNGLLG FESHHRRQDQ LMDDLSALSS PSGWNSSSAK AAAFAASSSD RNSERGRHGG  480
LEPTNLDDIL ATLDSKILSQ LQGLSLDAGS TQLQSPKGMQ MRQNMNQQLM TGYSSSQSSP  540
SFRTSSSFGI DPSGAAAAAL SSRSAAFAKR SQSFIDRSAA GRLSGISSSL SNASAVPPNL  600
SGWGSPDGKL NWGIQKEELN KLRKSASFGL RSSGSRFHTS ESSILNSSAE PDVSWVQSMV  660
KDSPAMSSRQ LSREDQQYHL NASRGSETIP TWADQLYMEQ EQIVH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795434.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform X1
TrEMBLA0A1U7Y8560.0A0A1U7Y856_NICSY; zinc finger CCCH domain-containing protein 66-like isoform X1
STRINGXP_009795434.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-156C3H family protein