PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00571g06006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 239aa MW: 27044.1 Da PI: 8.728 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.1 | 6.5e-08 | 29 | 52 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffar G C G+ C F H+ Niben101Scf00571g06006.1 29 KRVLCKFFAR-GACLKGEHCDFLHD 52 99********.*************6 PP | |||||||
2 | zf-CCCH | 23.4 | 1e-07 | 60 | 80 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C ++++ G+C +G+rC++ H+ Niben101Scf00571g06006.1 60 VCTYYQK-GICAFGSRCRYEHV 80 5******.***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.009 | 27 | 54 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.3E-5 | 27 | 53 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-6 | 28 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.94E-8 | 29 | 52 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 1.9E-7 | 32 | 90 | No hit | No description |
PROSITE profile | PS50103 | 13.31 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 57 | 79 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0022 | 57 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 9.6E-10 | 141 | 208 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 1.79E-12 | 141 | 212 | No hit | No description |
CDD | cd00162 | 9.49E-4 | 147 | 208 | No hit | No description |
PROSITE profile | PS50089 | 12.238 | 148 | 206 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 9.4E-7 | 148 | 205 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 2.5E-7 | 148 | 205 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE pattern | PS00518 | 0 | 172 | 181 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
TATSPRLQSA ELTSQFIFNS QSKVETMSKR VLCKFFARGA CLKGEHCDFL HDSKDVPNNV 60 CTYYQKGICA FGSRCRYEHV KITRSQPSLP SSSASIVELK RVNATDQSIC SSSTAGNCPQ 120 GKKEEHMKTC ETREKQLDLL KHSQEIECGV CLERVLSKTI MAERKFGILS ECDHPFCISC 180 IRNWRSSSPS IGMDVNSTLR ACPICRKHSY FVIPSVIWYS TKEEKQEIIS SYKAKLRFL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019230147.1 | 1e-152 | PREDICTED: E3 ubiquitin-protein ligase makorin-like | ||||
Swissprot | E0X9N4 | 9e-91 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A314KK47 | 1e-151 | A0A314KK47_NICAT; Zinc finger ccch domain-containing protein 69 | ||||
STRING | XP_009781754.1 | 1e-149 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3386 | 21 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 3e-88 | C3H family protein |
Publications ? help Back to Top | |||
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