PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00530g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 380aa MW: 42725.5 Da PI: 4.4164 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 134 | 183 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ kl+g Niben101Scf00530g01001.1 134 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 183 89*******.**********82....35*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 133 | 190 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.21E-33 | 134 | 190 | No hit | No description |
PROSITE profile | PS51032 | 23.617 | 134 | 191 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-39 | 134 | 197 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-12 | 134 | 183 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-21 | 134 | 191 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.4E-10 | 135 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-10 | 157 | 173 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MDHDMLCPIK YTEHRNVIRK VTKPSPVKSK KFPEPQKSNQ YNRSVPPKTV RISVTDPDAT 60 DSSSDEEDQL FGRRRVKKYI NEISIETAVK CEVSMPASGK TAVKKRAADV LQPKQKPMKV 120 KEVQPPQSVG SVRKFRGVRQ RPWGKWAAEI RDPARRVRLW LGTYDTAEEA AMVYDNAAIK 180 LRGPDALTNF LTPPKPEIEV PSNSGYESGN ESRNIPSPTS VLRSRMSQSS EETEQQSRSE 240 PVQEECPSVQ GPMECEQAVQ DVEPFGLPVK QEMEECQGET CMIPDYSDDY LPTDVPFLED 300 FFNFEAAEQT LFEDTTTGFP NDFGTSYNDI SSSGFVNDFL FNDDFGNFDD SFQDLGTLGV 360 DDYFQDIGAD FSSVDSLLAI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-21 | 133 | 190 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 8e-21 | 133 | 190 | 4 | 62 | ATERF1 |
3gcc_A | 8e-21 | 133 | 190 | 4 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019264232.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | A0A314L4X8 | 0.0 | A0A314L4X8_NICAT; Ethylene-responsive transcription factor crf4 | ||||
STRING | XP_009596437.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-58 | cytokinin response factor 4 |