PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00508g10011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 77aa MW: 8637.15 Da PI: 10.5337 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.1 | 3e-25 | 9 | 61 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-..EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCda..evaviifsstgklyeyss 51 k+i++k rqvtfskRr+g+lKKA+ LS+LCd+ +vav++fss+g+ly++ss Niben101Scf00508g10011.1 9 KPIKDKNSRQVTFSKRRKGLLKKAKQLSILCDVdvDVAVVVFSSRGRLYDFSS 61 78*****************************862268**************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.4E-31 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-25 | 1 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.805 | 1 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-15 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-23 | 11 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-15 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-15 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MGRKKVEIKP IKDKNSRQVT FSKRRKGLLK KAKQLSILCD VDVDVAVVVF SSRGRLYDFS 60 STNSGAVCAY HEALVFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 6e-17 | 1 | 67 | 1 | 65 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 6e-17 | 1 | 67 | 1 | 65 | Myocyte-specific enhancer factor 2B |
1tqe_R | 6e-17 | 1 | 67 | 1 | 65 | Myocyte-specific enhancer factor 2B |
1tqe_S | 6e-17 | 1 | 67 | 1 | 65 | Myocyte-specific enhancer factor 2B |
6c9l_A | 6e-17 | 1 | 67 | 1 | 65 | Myocyte-specific enhancer factor 2B |
6c9l_B | 6e-17 | 1 | 67 | 1 | 65 | Myocyte-specific enhancer factor 2B |
6c9l_C | 6e-17 | 1 | 67 | 1 | 65 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-17 | 1 | 67 | 1 | 65 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-17 | 1 | 67 | 1 | 65 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-17 | 1 | 67 | 1 | 65 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019237677.1 | 3e-33 | PREDICTED: agamous-like MADS-box protein AGL27 isoform X1 | ||||
Swissprot | Q8RU31 | 7e-22 | MAD21_ORYSJ; MADS-box transcription factor 21 | ||||
TrEMBL | A0A1J6KKE2 | 2e-31 | A0A1J6KKE2_NICAT; Agamous-like mads-box protein agl15 (Fragment) | ||||
TrEMBL | A0A1S4AZG2 | 6e-31 | A0A1S4AZG2_TOBAC; agamous-like MADS-box protein AGL27 | ||||
STRING | XP_009625850.1 | 4e-32 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57390.1 | 9e-19 | AGAMOUS-like 18 |
Publications ? help Back to Top | |||
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