PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00474g11008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 280aa MW: 32331.9 Da PI: 5.1434

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00474g11008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.3	7.1e-20	48	100	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ +q+++Le+ Fe +++++ e++ ++A++lgL+ rqV +WFqNrRa++k Niben101Scf00474g11008.1 48 KRRLKVDQVHALEKIFEVDNKLDPERKVKIAQELGLQPRQVAIWFQNRRARWK 100 557899**********************************************9 PP
2	HD-ZIP_I/II	125	3.3e-40	47	137	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 kkrrl+ +qv++LE+ Fe ++kL+perKv++a+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk++y+al+ + +++e+e+e Niben101Scf00474g11008.1 47 KKRRLKVDQVHALEKIFEVDNKLDPERKVKIAQELGLQPRQVAIWFQNRRARWKTKQLERDYNILKANYEALQVNYTKVEQEKEG 131 9************************************************************************************ PP HD-ZIP_I/II 87 Lreelk 92 L +elk Niben101Scf00474g11008.1 132 LINELK 137 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.71E-19	44	104	IPR009057	Homeodomain-like
SMART	SM00389	5.3E-20	45	106	IPR001356	Homeobox domain
CDD	cd00086	5.17E-17	47	103	No hit	No description
PROSITE profile	PS50071	16.471	47	102	IPR001356	Homeobox domain
Pfam	PF00046	4.4E-17	48	100	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.9E-20	50	109	IPR009057	Homeodomain-like
PRINTS	PR00031	1.6E-5	73	82	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	77	100	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.6E-5	82	98	IPR000047	Helix-turn-helix motif
Pfam	PF02183	7.4E-15	102	142	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MKRFSFSDSS GKLLYPPEEK NSTDFQAMLD GLEDKDGIEE NGCVTGKKRR LKVDQVHALE 60 KIFEVDNKLD PERKVKIAQE LGLQPRQVAI WFQNRRARWK TKQLERDYNI LKANYEALQV 120 NYTKVEQEKE GLINELKGLK EKIGEENSTA FRRPQELNPR NNEVNYKLNS DIMDSKDGSS 180 DSDSSGVMNE ENYNNTLNYQ PLMPKVSSYN ALDHLSLSSS TYTQLLDPRA SSTSSMRGYN 240 QQQQIGRMEE QNGFTTEDAC NIYSVDQAPN LYWYLSDHRN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	51	KKRRLK
2	94	102	RRARWKTKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016494558.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBL	A0A1S4C0F4	0.0	A0A1S4C0F4_TOBAC; homeobox-leucine zipper protein ATHB-6-like
STRING	PGSC0003DMT400079230	1e-146	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12939	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	1e-42	homeobox protein 16